Sory001815.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:1169944-1196913[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.063 3.3 8.1 4.8 1 23 58 80 58 80 0.99 2 12 3e-05 0.0015 18.5 2.5 1 23 89 112 89 112 0.93 3 12 0.00044 0.023 14.8 3.7 1 23 125 147 125 147 0.98 4 12 9.8e-06 0.00051 20.0 4.2 1 23 156 179 156 179 0.95 5 12 0.0057 0.3 11.3 0.8 2 23 192 213 191 213 0.95 6 12 0.00012 0.0061 16.6 3.5 1 23 222 245 222 245 0.93 7 12 3.9 2e+02 2.4 0.1 3 23 263 283 261 283 0.90 8 12 0.0047 0.24 11.6 2.2 3 23 294 315 292 315 0.95 9 12 0.053 2.8 8.3 5.1 1 23 328 350 328 350 0.97 10 12 0.085 4.4 7.7 4.2 3 23 361 382 359 382 0.93 11 12 2.1 1.1e+02 3.3 3.2 1 23 395 417 395 417 0.97 12 12 8.2e-06 0.00043 20.3 4.5 1 23 426 449 426 449 0.96
Sequence Information
- Coding Sequence
- ATGGATAATATAGATGAAGGAGTAGATTTAAATCCTCCAACAGATACTGCTTTTAATAACAAATCAATAAGTGTAGAACATATTaaacaagaaaataatatttcagaagaaaatataaatggatCATCAGATAACAAGTTTGAACTATCGAAAGAAGTTAAGAAAAAGGTCTATAGATGTACCTTATGTCGCTTTCAAACAGTACATAGGACAAGTCTTTACCAACATCAGAAAATTCACTTGGCAACAGAAGAACGACAGTTGTTTGCTTGTGCACACTGCaacaaaaagtataaaaataaagataacttAAAACTTCATCTGGAGGAGTATCATAATGATTCCAGAATGCAGGAATATCAGAAAGCGATCTATAGATGTGCTACATGTGACTACCAAACGACACATAACTCACAGCTTAATCAACATAAGAAAATTCACTTGACACTGGAAGAACGACAGGTGTTTGCTTGTGAGCACTGCGACAAGAAATATACGAGAAAATCCAAATTACAAGACCACCTCAAGTATAATCATATTGATTCCAGACAGAAAGAATCGTGGAAAAAGGTGAAATGCTCCAAATGTGACTACCAGACATTTCGTATGTCACTCCTTAGACGACACGAGGCAGTTCATTTGGCGCCGGAAGAACGACAGTTGTTTACTTGTGCACACTGTGACAAgaagtatagaaaaaaagttaacttaaaatatcacattgaGGATAAGCATATTGGCTCCAGGAGTTCCAGaatgaaGATATCGCAGAAAAAAGTCTATGGATGTGCCGTATGTGGCTTTCAAACACTATATAGGTCTAGTCTTATACAACACGAGGCAGTTCACGTGGCGCCGGAAGAACGAGAGTTGTTTGGTTGTAGCCactgtgaaaaaaaatatttcacaaaAGATGGCTTAGAATACCACCTTAAGGATAATCATATTGATTCcagggcGAAGGAATCGCAGGGAAAGATACATAGGTGTTCCACATGCAGCTACCAAACATCGCATATTTCATCTTTAAGCCGTCACGAGAAGGTTCACTTGGCAAAAGAAGAACGCCAGCTGTTTGGGTGTGCACACTGCCACAACAAATACAGGACAAAAGCCAGCTTAAAATACCACCTTGATAATACTCATATTGATTCCAGAATGAAGGAATCGCAGAAAAAGGTCTATAGATGTTCCACATGTAGCTACCAAACACCTAGTATGTCAAATCATAGACAACACGAGAAAGTTCACTTGGCACCGGAAGATCGACAGCTGTTTGCTTGTACGCAGTGTGACAAAAAATATACGTCAAAGCGGAATTTACAACATCACCTCAAGCGTGATCACGTTGATTCCAGAAATGCTGATTGTACATCTCCAACTGATGAAGTGATATTAGATTCTTTGAAAATGGAAATTGATGATTACACTCCACATTTGGATGACTTTAAAAATGCTGAACGTGTAGCGGTGACTAATAAAGTAAAATcagaagattttttaaaaatagaaattaatgATTATGACACCCtgattttaaataaagaaatgcAAGATAACTTTAGGAATACCGACAATCTATCTATAACTAAGAAGTTATGTATTAAGCTGGAAGATTTTATAAAACTGGAACCTGAAGATGACAAATAA
- Protein Sequence
- MDNIDEGVDLNPPTDTAFNNKSISVEHIKQENNISEENINGSSDNKFELSKEVKKKVYRCTLCRFQTVHRTSLYQHQKIHLATEERQLFACAHCNKKYKNKDNLKLHLEEYHNDSRMQEYQKAIYRCATCDYQTTHNSQLNQHKKIHLTLEERQVFACEHCDKKYTRKSKLQDHLKYNHIDSRQKESWKKVKCSKCDYQTFRMSLLRRHEAVHLAPEERQLFTCAHCDKKYRKKVNLKYHIEDKHIGSRSSRMKISQKKVYGCAVCGFQTLYRSSLIQHEAVHVAPEERELFGCSHCEKKYFTKDGLEYHLKDNHIDSRAKESQGKIHRCSTCSYQTSHISSLSRHEKVHLAKEERQLFGCAHCHNKYRTKASLKYHLDNTHIDSRMKESQKKVYRCSTCSYQTPSMSNHRQHEKVHLAPEDRQLFACTQCDKKYTSKRNLQHHLKRDHVDSRNADCTSPTDEVILDSLKMEIDDYTPHLDDFKNAERVAVTNKVKSEDFLKIEINDYDTLILNKEMQDNFRNTDNLSITKKLCIKLEDFIKLEPEDDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -