Sory001852.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:1056195-1083646[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.4 3.9e+02 1.5 6.6 1 23 59 81 59 81 0.93 2 14 0.0011 0.056 13.6 1.6 1 23 98 120 98 120 0.98 3 14 3.4 1.8e+02 2.6 2.9 1 23 129 152 129 152 0.90 4 14 0.0027 0.14 12.4 0.7 2 23 165 186 164 186 0.95 5 14 0.02 1 9.6 3.4 3 23 197 218 195 218 0.97 6 14 0.027 1.4 9.2 3.8 1 23 231 253 231 253 0.95 7 14 0.011 0.58 10.4 1.6 1 23 270 292 270 292 0.98 8 14 0.003 0.15 12.2 0.8 1 23 301 324 301 324 0.95 9 14 0.0013 0.07 13.3 0.1 2 23 337 358 336 358 0.95 10 14 0.0052 0.27 11.5 4.9 3 23 369 390 367 390 0.97 11 14 6.1e-05 0.0032 17.6 2.6 1 23 406 428 406 428 0.98 12 14 0.0031 0.16 12.2 0.8 1 23 437 460 437 460 0.95 13 14 0.00047 0.025 14.7 4.4 1 23 476 498 476 498 0.97 14 14 0.0012 0.061 13.5 0.6 1 23 507 530 507 530 0.96
Sequence Information
- Coding Sequence
- ATGGATAAAATAGATGAAGTATTAGATTTAAAACCCCCTACAGATAGTGCTTctaataacaaattagtgagTGTGGGAGATGTTAaacaagaaaatattgtttcagaagaaaatataaatggtGTATCATCAGATAATAAGTTAGAACTgacGAAGAAATCGCGGAAAAAGGTCCATATATGTTCCATGTGTAACTACCAAACGATATGTAAGTCAAATCTTCACAGACACAAGGCGCTTCACTTGCCACAGGAAGAACGGCAGGCggCAAATGAATCACAGAAAAATGTATATAGATGTGCCCTATGTGACTACCAAACACAATATAAGTCAAGTCTTAGGCGACACGAGAAAGTTCACTTGACGCCGGAAGAACGACAGATATTTGCTTGTGCACAGtgtgacaaaaaatatatgtgtAATCAGAGGTTACAAGATCACATTAAGTTTAATCATATTGATTCGAGAATGAAGGAATCGCAGAGAAAGGTGAGGTGTTCCATATGTCACTATCGAGCACGAGATATGTCAAACCTTAGACAACACGAGGCAGTTCACTTGGCACCGGAAGAACGAGAGTTGTTTGGTTGTGCGCACTGCGAAAAACAATATATGACAAAACGCCGCCTAAAAGTCCACCTTAAGACTAAACATAGTGGTTCCAGgaagAAGAAATCGCAGAAAAAGGTCCATATATGTTCCAGGTGTAACTACCAAACGATACATAAGTCAAATCTTGACAGACACAAGGCGGTTCACTTGTCACAGGAGGAACGGCAGGCggCAAATGAATCACAGAAAAATGTATATAGATGTGCCCTATGTGACTACAAAACACAATATAAGTCAAGCATTAGGCGACACGAAAAAGTTCACTTGGCGCCGGAAGAACGACAGATATTTGCTTGTGCGCAGTGTGACAAGAAATATATGTCAAATCGGAGGTTACAAGATCACATTAAGCTTAATCATATTGATTCGAGAATGAAGGAATCGCAGAAAAAGGTGAGGTGTTCCATATGTGACTATCGAGCACGAGATATGTCAAACCTTAAACAACACGAGGCAGTTCACTTGGCACCGGAAGAACGAGAGTTGTTTGGTTGTGCGCACTGCGAAAAACAATATATGACAAAACGCCACCTAAGAGACCACCTTAAGACTAATCATAGTGATTCCAGggCGAAGGAATTCACGAAATTCCAGAAAAAGGTTTACAGATGTGTCACATGTGGCTACCAAACGCCACGTAGGTCAAATCTTCACAAACACCAGCAAATTCACTTGGCACCGGACTTGCGACGGATGTTTGCCTGTGTATGGTGTGACAATAAATATGCGTCAAATCACACATTACAAAATCACATCGAGCGTAATCATATTGATTCCAGggCGAAGGAATTAAAGAAATCGCTGAAAAAGGTTCACAGATGTGTCACATGTGGCTACCAAACGCCACGTAGGTCAAATCTTCACAAACACCAGCAAATTCACTTGGCACCGGACTTGCGACGGAGGTTTGCCTGTGTATGGTGTGACAATAAATATACGTCAAATCAGACATTACAAATTCACATCAAGCGTTATCATATTGATTCCAGAAATGCTGATTGTACATCTCCAACTGATGAAGTGATATTAGATTCCTTAAAAATTGAAATGGATGAACTTACCATTTTGAATGACACTAAAAGTTCTGAATGTATATCTGCaactaatgaaataaaatccggagattttataaaaacagaatTTGATGATGTCACCCCAATTGTGAATAGAGATATGCACAATGACTTTAAAAATACCGAAGATTTGTCCGTAAATAAGGAAGTGAAGTTagaagattttataaaaatggaACCGGATGATGGCACttaa
- Protein Sequence
- MDKIDEVLDLKPPTDSASNNKLVSVGDVKQENIVSEENINGVSSDNKLELTKKSRKKVHICSMCNYQTICKSNLHRHKALHLPQEERQAANESQKNVYRCALCDYQTQYKSSLRRHEKVHLTPEERQIFACAQCDKKYMCNQRLQDHIKFNHIDSRMKESQRKVRCSICHYRARDMSNLRQHEAVHLAPEERELFGCAHCEKQYMTKRRLKVHLKTKHSGSRKKKSQKKVHICSRCNYQTIHKSNLDRHKAVHLSQEERQAANESQKNVYRCALCDYKTQYKSSIRRHEKVHLAPEERQIFACAQCDKKYMSNRRLQDHIKLNHIDSRMKESQKKVRCSICDYRARDMSNLKQHEAVHLAPEERELFGCAHCEKQYMTKRHLRDHLKTNHSDSRAKEFTKFQKKVYRCVTCGYQTPRRSNLHKHQQIHLAPDLRRMFACVWCDNKYASNHTLQNHIERNHIDSRAKELKKSLKKVHRCVTCGYQTPRRSNLHKHQQIHLAPDLRRRFACVWCDNKYTSNQTLQIHIKRYHIDSRNADCTSPTDEVILDSLKIEMDELTILNDTKSSECISATNEIKSGDFIKTEFDDVTPIVNRDMHNDFKNTEDLSVNKEVKLEDFIKMEPDDGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -