Sory010939.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- F56D1.1
- Assembly
- GCA_002938485.2
- Location
- NW:196540-243800[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.015 0.8 10.0 3.1 1 23 53 76 53 76 0.88 2 17 0.024 1.3 9.4 5.9 1 23 91 113 91 113 0.98 3 17 0.091 4.7 7.6 3.1 1 23 122 145 122 145 0.92 4 17 0.0013 0.067 13.4 2.8 1 23 161 183 161 183 0.97 5 17 0.0011 0.059 13.5 0.8 1 23 192 215 192 215 0.93 6 17 0.031 1.6 9.0 0.5 1 23 228 250 228 250 0.97 7 17 0.0044 0.23 11.7 1.2 1 23 259 282 259 282 0.91 8 17 0.00064 0.033 14.3 5.7 1 23 295 317 295 317 0.99 9 17 0.00015 0.008 16.3 3.2 1 23 326 349 326 349 0.95 10 17 0.023 1.2 9.4 1.9 1 23 362 384 362 384 0.98 11 17 0.00042 0.022 14.9 1.7 1 23 393 416 393 416 0.92 12 17 0.022 1.1 9.5 1.4 1 23 429 451 429 451 0.97 13 17 0.0087 0.45 10.8 5.1 1 23 460 483 460 483 0.90 14 17 0.7 37 4.8 2.6 1 23 496 518 496 518 0.97 15 17 4.6e-05 0.0024 17.9 3.6 1 23 527 550 527 550 0.93 16 17 0.18 9.3 6.6 5.5 1 23 563 585 563 585 0.97 17 17 3.9e-05 0.0021 18.1 3.0 1 23 594 617 594 617 0.92
Sequence Information
- Coding Sequence
- ATGATGGATAACATAGACGAAGTAATAGATTTAAAACAattgaaagaAGCTGATAAAAAAGTCTATAAATGTGCCATAAGTGGCTTTCAAACGCTACATAAGGCAAGTCTTCAAAAACACAAGAAAACTCATTTGGCACCGGAAGATCGAAAGTTATTTGCTTGTATACACTGTGACAAGAGATATATATCAAAACAAAGCTTACGTCATCACCTTGAGGATAATCATATTGATATTGTTTccaggTCCAAGGCCGCGCGGAAAAATCTCCATAAATGTTCCATTTGTGGCTACCAAACAAGAAAAATATCATGCTTTGAACGACACCGGGAAACTCACTTGGCACCAGGAGAACGACAGATGTTTGCTTGTGTACACTGTGAAAAGAAATGTTCGGAAAAAAGGAGATTAACAGACCACATTATCGATAATCATATTTATCATATTGATTCCAgattgaagGTAGGACAGAAAATAATCTATAGATGTTCCACATGTAGCTACCAAACCAAAAACATGTCCAATCTTAAAAGACACAAGGATATTCACTTGGCACCGGAAGAACGACAGATATTTGCCTGTGCGCAGTGCGACAACAAATATACATCAAATAAGAATTTACTACGTCACGTCAAGGACAGTCACATTTATTACagatcgaaaGAAGCTGAGAAAGAAGTCTATAAATGTGCCATATGTGGCTATCAAACGCTAGATAAGCCCAATTTTTACAGACACGAGAAAATTCACATGGCACCGGAAGACCGACAGTTGTTTGCGTGTGTACACTGTGATAAGGAATATACAACAAAACAAATCTTACAACGTCACCTTGAGGATAATCATATCGATTCCAGaTCGCAAGCAGCTGAGAAAAAAGTCTATAAATGTACCATGTGTCACGCTCAAACGCGCAAAGAGTCACATCTTCGCCAGCACATGAAAATTCATTTGGCACCGGAAGACCGAGAGTTTTTTGTATGTACACACTGTGATAAGAAATATATGACAAAGAAAGCCTTAAAAAGTCACCTTGAGAATAATCATACTGATTCCagaTCGCAAGCAGCTAAGGAAATAGTCTTTAAATGTGCCATTTGTGACTTCCAAACGATACGCGAGCTAAATCTTCACAACCACAAGAAAATCCACTTGTCACGGGAAGAACGACAGCTGTTTCCTTGTACGCTTTGTGAGAAAAAATATTCAACAAAAGGCTACTTACAGTCCCACTTTATAAACAAGCATTCTGATTCCAGaCCGAAAGAAGCTGAGCAAATGGTCTTTAGATGTGCCATATGTGGCTTTCGAACGCTACGTAGTACAAGTCTTCGCAGTCACAAGAAAATTCACATGGCACCGGAAGAACGACAGTTGTTTGCATGTACGCACTGTGATAAGACATATAAATCAGGCCATTTCTTACGACGTCACTTTGAGGAGAATCATGTTGAtggcagaTCGCAAGTAGTTGAGAAAAAAGTCTATAAATGTGCCATATGTTTCTTTGAAACGCTACATAAGGCAAGTCTTCGCGACCACAAGAACACCCATTTGGCACCGGAAGAGCGACAGTTGTTTGCATGTGCACACTGTGATAAGAAATATACATCAAAACAAAACTTACGTCATCACATTGAGGAGAATCATATTCATTCCAGATCGGAAGAAGCTGAGGAAAAAGTCTTTCATTGTACCACATGTGGCTTTCAAACGCAatataaatcaaattttctCAGTCACAAGAAAATTCATTTGCCACTGAAAGACCGACAGTTGTTTGCATGTACACACTGTAATAAGAGATATACAACAAAACGAGGCTTACAACGTCACCTTGAGGATAATCACACACATATTGATTCCAGAAATGCCGATTGTACATCTTCAACTGATGAAGTGATATTAGATgctttaaaaattgaaattgatGATATCGCTTTGCCTTTGGATGACTCTAAAAATTCTGAATGTTTAGCTGTGACTAATGACATAAAATCGgaagattttataaaaacagaacCTGAAGATGTCGCTCCGATTATGAAGACAGACGTGCACGATGACTTtaaAAGTAGCGAAAATGAATCTGCCACTCGAAATGTGAAGCTagaagattttataaaaatggaACCCGACGATGACGTCTGA
- Protein Sequence
- MMDNIDEVIDLKQLKEADKKVYKCAISGFQTLHKASLQKHKKTHLAPEDRKLFACIHCDKRYISKQSLRHHLEDNHIDIVSRSKAARKNLHKCSICGYQTRKISCFERHRETHLAPGERQMFACVHCEKKCSEKRRLTDHIIDNHIYHIDSRLKVGQKIIYRCSTCSYQTKNMSNLKRHKDIHLAPEERQIFACAQCDNKYTSNKNLLRHVKDSHIYYRSKEAEKEVYKCAICGYQTLDKPNFYRHEKIHMAPEDRQLFACVHCDKEYTTKQILQRHLEDNHIDSRSQAAEKKVYKCTMCHAQTRKESHLRQHMKIHLAPEDREFFVCTHCDKKYMTKKALKSHLENNHTDSRSQAAKEIVFKCAICDFQTIRELNLHNHKKIHLSREERQLFPCTLCEKKYSTKGYLQSHFINKHSDSRPKEAEQMVFRCAICGFRTLRSTSLRSHKKIHMAPEERQLFACTHCDKTYKSGHFLRRHFEENHVDGRSQVVEKKVYKCAICFFETLHKASLRDHKNTHLAPEERQLFACAHCDKKYTSKQNLRHHIEENHIHSRSEEAEEKVFHCTTCGFQTQYKSNFLSHKKIHLPLKDRQLFACTHCNKRYTTKRGLQRHLEDNHTHIDSRNADCTSSTDEVILDALKIEIDDIALPLDDSKNSECLAVTNDIKSEDFIKTEPEDVAPIMKTDVHDDFKSSENESATRNVKLEDFIKMEPDDDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -