Sory001820.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:1356140-1396068[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0055 0.29 11.4 5.9 2 23 55 76 54 76 0.96 2 14 0.0043 0.22 11.7 1.6 1 23 85 108 85 108 0.95 3 14 0.026 1.4 9.3 4.8 2 23 125 146 124 146 0.96 4 14 0.00022 0.012 15.8 0.9 1 21 155 175 155 178 0.90 5 14 0.0016 0.083 13.1 1.2 1 23 194 216 194 216 0.98 6 14 0.0055 0.29 11.4 1.7 2 23 226 248 225 248 0.89 7 14 0.0014 0.072 13.3 1.3 2 23 266 287 265 287 0.95 8 14 0.00045 0.023 14.8 4.0 3 23 298 319 296 319 0.96 9 14 0.054 2.8 8.3 1.4 1 23 337 359 337 359 0.97 10 14 0.14 7.4 6.9 8.5 1 20 368 387 368 391 0.89 11 14 0.027 1.4 9.2 3.4 1 23 404 426 404 426 0.98 12 14 8.4e-06 0.00044 20.2 6.2 1 23 435 458 435 458 0.96 13 14 0.00017 0.0087 16.2 1.1 1 23 471 493 471 493 0.98 14 14 0.00098 0.051 13.7 4.2 1 21 502 522 502 525 0.94
Sequence Information
- Coding Sequence
- ATGCCTGCTGCATGCTGGATTTTGGCGGATATTCTAGCTGAACTGAattctgtgtattttttctcttGGCTTGGCACTGacctttttttattagaaactaTGGATAACATTGATAAAGTAACATATTTAAAACCatcggAAAAAgctgagaaaaaaatatgtagatgttCCATTTGTGGCTATCAAACACAAAACGTGTCACATTTTAAACGACACCAAAAAATTCACCTGGAACCAGAAGAACGGCAGTTGTTTTCTTGTGCGTACTGTAACAACAAATATAAGACAAAACCGAGCTTACAATATCACCTTGAGAATAATCATACTAATCCAAGagatCGCAAAAGATCGCAAAAAGTCGAGAAAGTCTGTAGATGTTCCATTTGTGGCTATCAAACACAAAATATGTCATATTTTAAACGACACAAGAAAATTCACCTGGCACCAGAAGAACGACAGTTGTTTGCTTGTACACACTGTGgccaaaaatatataacaaaaccTGGCTTAAAACGTCACCTTGTGGATAATCATATTGATTTCAGggCGAAGAAATTAAAGAAATCGCAGAAAAAGGTTTATAGATGTGCCGCATGTGGCTACCAAACACCACATAGGTCAGATTTTCGCAAACACCAGATAATTCACTTGGCACCGGAAGAACGACAGATGTTTGCCTGTATGTGCTGTGACAAGAAATATACATCAAATCAGGCATTACGAAATCACATCATTCGTGATCATATTGATTCTAGGTTGCCGATGCCTGAACTGAAGGAATCGCAGAAAAAGATGAGATGTTCCAACTGTGACTACCATACATCACGTATATCAGACCTTAGACGACACGAAGCAGTTCATTTGGCACTGGAAGAACGACAATTGTTTGGTTGTACGCactgtgaaaaaaaatatacaacaaaACACGGCCTAAAAGAACATCTTAGGGATATTCATCTTGAGGATATTCATAGTAATTTCAAATCGCAAAAAGTTGAGAAAAAAGACTATAGATGTGCCATATGTGGCTACCAAACGCTAGAGAGGTCAAATTTTTACAGACACAAGAAAATTCACTTGGCACCGAAAGAACGACAGCTGTTTTGTTGTACGCATTGTGATAAGAAATATGCATCAAAATGTAGCTTACAATACCATTTTGGGTATGTTCATACTGATCCCAGgTCAGAGGATGCGCAGAAAAATATCCATAAATGTTCGAATTGTGACTACCAAACGATAATTATGTCAAACTTTAAACAACACCAGAAAATTCACTTGGCACCAGAAGAACGGCAGATGTTTGCTTGTACACACTGTGACaagaaatatagaaataaagataACTTAAAACATCACATTGAGAAGAAGCATAATGTTTCCAGgcCGAATGGAGGGCAGAAGCAGGTCTATAGCTGTACTATATGTGGCTACGAAACACCACGTCAGTTCAATTTTAACACCCACAAGCAAATTCACTTGGCACCGGAAGAACGACAGTTGTTTGCCTGTAGGCAGTGTGACAAGAAATATACGTCGAATCAGACATTACAACGTCACATCAAGTGTAGTCATGTTGATTCAAGAAATGCTGATTGTATATCTCCAAATAATAAAGTGATATTAGATTCTTTAAAAATTGAAGTTAATAATGACGTTCCGCTTTTAGAAAACCATAAAAATGCTGCATGTCTATCTGTGACATCTGTGCCTAGCAAAATAAAAtcagaaattttttttaaaacagaaattGAAGATGACTCTCCGGTTTTGAATAATAACATACATGCTGACTTGGAGAATACCGATTGTCTATCTGTGACTAATGAAGTAAAATCagaggattttttaaaaataaaaattgatgatGTTCCGTTTTTTAATAAAGACATGCCCGATTACTTTAAAAATAGCGAAGATTTTTCTGTATCTAAGAAAATCAAGTTAGAAGATTTCATAAAAATGGAACCTGATGACGCTCCGCTTTTGGATGAAGACCGCgcattttaa
- Protein Sequence
- MPAACWILADILAELNSVYFFSWLGTDLFLLETMDNIDKVTYLKPSEKAEKKICRCSICGYQTQNVSHFKRHQKIHLEPEERQLFSCAYCNNKYKTKPSLQYHLENNHTNPRDRKRSQKVEKVCRCSICGYQTQNMSYFKRHKKIHLAPEERQLFACTHCGQKYITKPGLKRHLVDNHIDFRAKKLKKSQKKVYRCAACGYQTPHRSDFRKHQIIHLAPEERQMFACMCCDKKYTSNQALRNHIIRDHIDSRLPMPELKESQKKMRCSNCDYHTSRISDLRRHEAVHLALEERQLFGCTHCEKKYTTKHGLKEHLRDIHLEDIHSNFKSQKVEKKDYRCAICGYQTLERSNFYRHKKIHLAPKERQLFCCTHCDKKYASKCSLQYHFGYVHTDPRSEDAQKNIHKCSNCDYQTIIMSNFKQHQKIHLAPEERQMFACTHCDKKYRNKDNLKHHIEKKHNVSRPNGGQKQVYSCTICGYETPRQFNFNTHKQIHLAPEERQLFACRQCDKKYTSNQTLQRHIKCSHVDSRNADCISPNNKVILDSLKIEVNNDVPLLENHKNAACLSVTSVPSKIKSEIFFKTEIEDDSPVLNNNIHADLENTDCLSVTNEVKSEDFLKIKIDDVPFFNKDMPDYFKNSEDFSVSKKIKLEDFIKMEPDDAPLLDEDRAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -