Sory007007.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitophilus oryzae
Gene Symbol
zfh1
Assembly
GCA_002938485.2
Location
NW:124310-192763[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.016 0.82 9.9 1.3 2 23 86 108 85 108 0.94
2 9 0.0042 0.22 11.8 0.1 3 23 140 160 138 160 0.95
3 9 8e-06 0.00042 20.3 0.6 2 23 167 188 166 188 0.97
4 9 1.5e-06 7.8e-05 22.6 5.9 1 23 197 219 197 219 0.99
5 9 6.3e-05 0.0033 17.5 1.0 1 21 225 245 225 246 0.95
6 9 0.093 4.9 7.5 1.7 2 19 502 519 501 519 0.95
7 9 3.8e-06 0.0002 21.3 1.4 1 23 853 875 853 875 0.95
8 9 0.00015 0.0079 16.3 9.4 1 23 881 903 881 903 0.98
9 9 0.0024 0.12 12.5 4.3 1 21 909 929 909 930 0.96

Sequence Information

Coding Sequence
ATGACGCCTGCCGCCGCCGCCGTCGATGTCGGAACAACATCGCACAGTGCACGTCCTGAGTGGGACCGGTGCGCGCCTCGACGTCCGCCTCATTCGGCCATGGTCGCGCGAAGTGAGAGCATGTTTAGTTACGACAGTTATTCCTACCGGCTCTGGAGTTTAGCCAACGTCTGGAACACCTGTCAACCTCCGTCGCTGACAAACGGCAGCCTCAAGGAAGTAGAAGAGCTCAACGCCACACCGGAGTATTTCATCAAGTGTCCGCAATGCCAGAAAGGATGTCAGAGTTTTCAGGCCCTGAAGGAGCACATGGAACTGTCGCACACCGAACTGACAGCGTCATCAGAAACGAGCATGTCGGTTGCCAGCAGCGCGGTATCGCCCTCGCCTCTAGGTGGTCCAGGTGGGCCGTATGGCTGCGCTCAATGTAGCGCATCGTTCGCCTCCAAGGAACAGTTGGAAAAGCACGAATTGCTTCATTCGCCGAACGCTCAAGTGTCATGCAAAATATGCAACAAGACCTTTGCAAATGTCTACAGACTTCAAAGACACATGATCAGTCACGATGAGAGTGCCGTATTGAGAAAATTCAAGTGCACGGAATGTGATAAGGCCTTCAAATTTAAACACCATCTTAAGGAACACATACGAATACACAGCGGGGAAAAACCGTTTGAGTGCGGCAACTGTGGAAAACGATTTTCACATTCCGGATCCTACTCCAGCCATATGACATCGAAAAAATGTTTAGTTATGAATCTGAAACAAGGCAGAAATCGTACGCTTCTAAACAATTCTATGTTAGACAAGAACTCGCAGCAAAATCTCAAGGGACCCAAAAGATCCTCGGTTAAttctataaataataatattacctCTAGTCCAAACCACAACTCTCCGTTTATGCCAATTCTACCTAAATATTCAGAAGCAGCAGCCGCTTTGTTCCAATCCCAGTTGGCCGGGGGTGCGTCTGTGCCGCCATATTACCTAACAACGCATAACATGTTGAATTCTGGTCACCCCATCAATCCGTATGTTCCTACGTTAAGTCACATCCTTGAACAACTCCATCAGCAGAATGCTGCGAATCCAATGCGCAACGCGCTAATGGAAACATCTGAAATAAGAACTTCTGAAGAGCCCAATAAACATCTGAGCGAGAAACCCATCATGACATCTTCTGAAGCTAGTCATAGACCGCAAAACTTTGATGAAACGTCTAAATCAAACGCATCGGATTGTGGAGACTTAGTAATGGATGAGGAAGAAGATAATCAAAGTCGATGTGAACCAAATAGAGTCGACGAAAGATATTCTAATAAACCAGAATTTGAAGAAACAAAAATTAGCAACCTGAGTATGCAAGAAGCTGTGTCTAAAGCTATAAGTAATGTCGATAACAGCGAAACTATACCTGCTAATAGCCAGACATTTTGTGATGGTGCTAGTGAAACTACTCATATTAGTCCGGCAAATTCACCTAAAAATGCCGGCTCTAAATATTGCCATCACTGTAATAAGTCATTGAATTCAATAGAACAACTGGAAGACCATGATTGCAAGGATCCTCAAAGTGAAGGTCTGGCTGCAAAACTCGAAGCAGCGTTAACACCAAAGTCGGAGAACTGTTCCAACGAAAATATGAGTGGAGCGGAAGATCAAGATTTCGAACGATCAAGTTACCACACGAATGATGAAATGGATTCGGAGAACTATACTACAACGGATCATGTAAATGAGGACGGTAGAAAAGTAAGAGTTCGATCCTTGATATCCGAAGAACAATTGAAGGTGCTTAAAGATCATTATAAAAGTAATCCCAGACCGAAACGGGAAGATCTTGAAAAAATCGCGAGCAGCATTGGATTTCCCGTTCGGGTCGTTCAAGTATGGTTCCAAAATACTAGAGCGCGTGATCGAAGAGAAGGCCGACTCATTCAAGTTCCTTACAGTCCAGTCGCGTCAGGGTCACGATATTCTGTGCCTTCAACTCACGCGGGGTATCCTGCTTTACCCCACGAAGACGCATCAGAGCAACCGTtggatctatcgattaaaagaGATTCGAACTCAAACGAGACTACGCCGTGTTCTTCTCCGAAAAGGCCGCATTCTGTAAACCATTCCGAGTCCCACGACGAAGTGGTGAATTTAAGTCACAAATCGTCTAGAAGCCCCACCCCCTATCTGCCTTATCACAATAGTTTTCAAGGATCAAATTCCTCCGATCCGAGCCAGTCTCCGTCTCCCTTAGAATTCAACAGCAGTCGATTAGCACAGATCTTTAACCAGCCCGCTCATAAGTTAGCGACGTTATCTAGTCTCGTTCCTATGGATCATTTGATGCATTTCGGAGCTCATGATTTGCCTTTGAGCTTAACGCAATTTATCAATAGCAGAATATCTAGTCTGAGTCCCAATTCGAATAACTCGTTGCACGAAGCGACGCAAGACGACGAAATGATGCAGAGTAAACGAGCAAAGGTGTCGCCGTTTATGCTGAAGAATTTAAGCAGTCCCGGATTGAGCCAAGAAGTTGAAGCTGAAGGTCAGTTTCAGTGCGATCAATGCGACAAAGCGTTTTCGAAACAAAGTTCCTTGGCCAGACATAAATATGAGCATTCTGGTCAGCGTCCCCACAAATGTGACGAATGTCCCAAAGCCTTCAAACATAAGCACCACCTTACGGAACACAAGAGACTACATTCTGGTGAGAAGCCGTTTCAGTGCAGCAAGTGTCTAAAACGATTTTCGCACTCTGGATCGTACAGTCAACATATGAACCACAGGTTTTCGTACTGTAAACCGTACAGAGAATAA
Protein Sequence
MTPAAAAVDVGTTSHSARPEWDRCAPRRPPHSAMVARSESMFSYDSYSYRLWSLANVWNTCQPPSLTNGSLKEVEELNATPEYFIKCPQCQKGCQSFQALKEHMELSHTELTASSETSMSVASSAVSPSPLGGPGGPYGCAQCSASFASKEQLEKHELLHSPNAQVSCKICNKTFANVYRLQRHMISHDESAVLRKFKCTECDKAFKFKHHLKEHIRIHSGEKPFECGNCGKRFSHSGSYSSHMTSKKCLVMNLKQGRNRTLLNNSMLDKNSQQNLKGPKRSSVNSINNNITSSPNHNSPFMPILPKYSEAAAALFQSQLAGGASVPPYYLTTHNMLNSGHPINPYVPTLSHILEQLHQQNAANPMRNALMETSEIRTSEEPNKHLSEKPIMTSSEASHRPQNFDETSKSNASDCGDLVMDEEEDNQSRCEPNRVDERYSNKPEFEETKISNLSMQEAVSKAISNVDNSETIPANSQTFCDGASETTHISPANSPKNAGSKYCHHCNKSLNSIEQLEDHDCKDPQSEGLAAKLEAALTPKSENCSNENMSGAEDQDFERSSYHTNDEMDSENYTTTDHVNEDGRKVRVRSLISEEQLKVLKDHYKSNPRPKREDLEKIASSIGFPVRVVQVWFQNTRARDRREGRLIQVPYSPVASGSRYSVPSTHAGYPALPHEDASEQPLDLSIKRDSNSNETTPCSSPKRPHSVNHSESHDEVVNLSHKSSRSPTPYLPYHNSFQGSNSSDPSQSPSPLEFNSSRLAQIFNQPAHKLATLSSLVPMDHLMHFGAHDLPLSLTQFINSRISSLSPNSNNSLHEATQDDEMMQSKRAKVSPFMLKNLSSPGLSQEVEAEGQFQCDQCDKAFSKQSSLARHKYEHSGQRPHKCDECPKAFKHKHHLTEHKRLHSGEKPFQCSKCLKRFSHSGSYSQHMNHRFSYCKPYRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00376140;
90% Identity
iTF_01351546;
80% Identity
iTF_01351546;