Sory001742.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- Sall1
- Assembly
- GCA_002938485.2
- Location
- NW:2881179-2895907[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.5 2.9e+02 1.9 0.1 3 23 13 33 11 33 0.90 2 13 5e-05 0.0026 17.8 3.0 2 23 602 624 601 624 0.92 3 13 0.03 1.6 9.1 4.3 1 23 632 654 632 654 0.99 4 13 0.00015 0.008 16.3 1.1 2 23 657 678 656 678 0.96 5 13 0.14 7.2 7.0 2.4 1 21 684 704 684 706 0.91 6 13 1.4e-05 0.00072 19.6 3.9 2 23 713 734 712 735 0.95 7 13 2.3 1.2e+02 3.2 2.3 6 23 749 766 747 766 0.94 8 13 0.00026 0.014 15.6 2.2 2 23 772 794 771 794 0.96 9 13 6.6e-05 0.0034 17.4 2.4 1 20 837 856 837 859 0.92 10 13 0.00051 0.026 14.7 0.7 1 23 867 889 867 889 0.99 11 13 0.0026 0.13 12.4 5.5 1 23 895 917 895 917 0.98 12 13 6.1e-07 3.2e-05 23.8 3.5 1 23 923 945 923 945 0.99 13 13 0.0004 0.021 15.0 7.0 1 23 951 973 951 974 0.96
Sequence Information
- Coding Sequence
- ATGTCGAGTTTAGAAACCATGGATTCTAATGTAATGTGCCCAGTGTGTACACTGTATTTAAGGCCAGGAATCACTTTAAAACAACACTTAACAAGTCATCCTAAGCAAAAAGTTATTGATGCTCTGGTAAAAATTTCTCTTCACGATGAACCGTCTAAAATACCAAGTTCCTCCAATAGTGATGATGTTTCTGAAGGTGCTTCAACAATATCTGAAAGTCCCAGTCCACCATCAAACAGTTCCATGCCTCCGTACTTAAATCAGGTACCCTTAGGTCCTCCCTCTTCCCACATGGCACCCCAAATGCCAGGAAACCATTTCTTTATGTACCAACAAAGTATGAGTACCTCTGCCCCTCATCAacctaaccttcccccactCACTCTCAATCCTTTTGCTCAACAGTATCTAGTTCCTGCCGTCTACAATCCTCAAATGATGCCATATTTCTACCAGCAGCAGCAACTGATTATGTCCAGCAATGGCATACCCCCTCACATCAAAGCCTTGCCGTTTGAAGGCGATCCTAGCTCCACCTCACAGTCATCCAGTAAATCAATTGAAATCATCAACAAAGATAAATGTGAAGAGGATTTGGTTGAAAAAGTGGTTGAATTGGACCAGGATGGATTGAACAGCCAGGGAGAAAGTATAACTAGTGAGGAGGAGGAGAATGAAAGTGAGGTTAACAGTGAAGAAAACCAACAAGCGACATCTGAATACAAGGAAGAAACAGAACAAGTCGTTATAAACCAAACATCTGATAGTAATTATGAGGAAAATGTGTACCAGGGACCCAGTAGGGAATACGAGAACCATCAAAACATTAATgaagaagagtgtgttgatACTTCTTTCTCACAGGTATCAAATTCCGAGTGGAACGTCaattctgatttaaataaagCGTGCCAAACTCAGACAAATAATGTTTTATCTCCTAgACCATCAGTTCATTCTGAACATCAGCAAATCAATGACAACACTCCGGAATATTACTTTATTGACCAAAGAAGTAATGTCTCAGTTGTTCTTAGGTCAGACAACATTGCCTCAACTTTTGAACAAtctCAACCCATTTACAATTCTCAAAACATCCTCAACAATAATGAAGGAGATTTCATGAATGACATAGAAGGTATGCAAGTGATTTTAGGCGATTTCCCCAATGCCACACTCATTCCTCAAGATAATTTTGATTCAATGAGGCAACAGAGTAGTCCTCCCATACTGATGACTATAGGCGGAATGAACATGTCGCCAAAGAGCAATAATGATGGcttcattcacattatggaaCCAAAAGGGCCAGAGCCTAGTGAAAATTGTATGGGAAATGTTAATATCAGGTCGGATGAAAAGATGCCGCCTAGAGGTGAACTCTCAGGACAAGAAAGCATGGGAAGTGATTTAACATGGAACCAAATACAACATTATCAAGATCAGGATGATCCAATGTGTTATGAACCAAACTCTTGGGATACTAGGTCAGAGATTAATTCATATGATGAAGAGACTGATACAAAAgATGTGTATTCCAATGACCCTGTTAAAGAAGAGGACGTAAAAGAAAACGTTACTAAAGTGAAGAAAGACAAGCCTGTTGCGTTAGAAATGATAAAAATTAAGCCTAAGAAGTTACTAATCAAGCAAAAACGCGCCAAGAAAGAGCCACAGACTAGTTTCAACAATGTGTTCACCAACAAACTTAAAACTGAAAATGCCGAGGCCGATGGGTTCGATAATATAGAAACAGGTCCATCTGTAGAAAATTTGAAAGAGTTCAAGACTGAAGAACCGGATATGTGCAAGCAATGTGATAAAATGTTCAAAACCAAAAAAGAATTGAGGGCTCATCATTTGGAATTCCACAAAGTGATGCGTCTGAAGGGATACAAGTGTCGAATATGCCATGAAGACTTTGATATGGAACACAAATTCAACGAGCATTTGAAAATACATCCTCTGGAGTGTCATATCTGTGGAAAATTGTTTTTCAGgcGTCAAGGTCTGAAATTGCATATAGCCAGACATGAAGGTGTAAAACCGTACAAATGCGATTTGTGCGATAAGGCCTTTTTGGTGAAACAGAAACTGGAGGAACACAGGAATTGTCATACCGGAAACGCGCCTATCCAGTGTCCCATGTGTCCAGAAAGGTTTAAGAGACACTCGAATTTAGTACAGCACAGAAACAAGCACCATTTTTTTATCAAGAAAAAACTGAAGGACTATGTTTGCTTTTGCGGCGAGGTGTTCCACTCGAAGAAAAAATTCGCATGGCACAACGAGAAACACGACCCGAAACCTAAATCCTGTACGCAATGCAGTGAAAAATTCATCCACACAGCGGGCCTCACTAGGCACATGCGCAGGGCCCACAACGCAGAGTACCTGCCCGACGGCAGAGATCCCAATTCGCTGAACAGGGTGTGTCCGATCTGCAAAGGGATCTATTTGAAGACTTCGATGGAACCGCACATGCAAACTCACCTAAACCAGAAGGCTTTCTCTTGTACGGTGTGCAACAAAAAGTTCACCACCAAATGGAACCTAAAATTGCACAAGTGGACGCACGCGCCCCGCACGCAAAAACCCTTTAAATGTAATCAGTGCAAGGGTGCGTTCATCAGGGAGACCGATTACATTTCTCACATGAACTCGCACAAGAGCGTCAGACCGTACACGTGCAACCACTGCGGCGCCCAGTTTATCAGGAAGTACAACTGTCAAAGACACGTGAAGGAGCACGAAAACGAAAAGACCTACGTGTGCAACGTGTGCAATAAGTCGTTTCACAGGTCGTACTACTTAAAAGATCATATGAGGGTGCATACGGGTACGAGACCCTACTCGTGTCACATTTGCGGTAAGACGTCCACTACTAAGTCGAATCATAACAAACACATTCAGATACATCATGCCAGAGAACCAGTTAGTACtgagaattaa
- Protein Sequence
- MSSLETMDSNVMCPVCTLYLRPGITLKQHLTSHPKQKVIDALVKISLHDEPSKIPSSSNSDDVSEGASTISESPSPPSNSSMPPYLNQVPLGPPSSHMAPQMPGNHFFMYQQSMSTSAPHQPNLPPLTLNPFAQQYLVPAVYNPQMMPYFYQQQQLIMSSNGIPPHIKALPFEGDPSSTSQSSSKSIEIINKDKCEEDLVEKVVELDQDGLNSQGESITSEEEENESEVNSEENQQATSEYKEETEQVVINQTSDSNYEENVYQGPSREYENHQNINEEECVDTSFSQVSNSEWNVNSDLNKACQTQTNNVLSPRPSVHSEHQQINDNTPEYYFIDQRSNVSVVLRSDNIASTFEQSQPIYNSQNILNNNEGDFMNDIEGMQVILGDFPNATLIPQDNFDSMRQQSSPPILMTIGGMNMSPKSNNDGFIHIMEPKGPEPSENCMGNVNIRSDEKMPPRGELSGQESMGSDLTWNQIQHYQDQDDPMCYEPNSWDTRSEINSYDEETDTKDVYSNDPVKEEDVKENVTKVKKDKPVALEMIKIKPKKLLIKQKRAKKEPQTSFNNVFTNKLKTENAEADGFDNIETGPSVENLKEFKTEEPDMCKQCDKMFKTKKELRAHHLEFHKVMRLKGYKCRICHEDFDMEHKFNEHLKIHPLECHICGKLFFRRQGLKLHIARHEGVKPYKCDLCDKAFLVKQKLEEHRNCHTGNAPIQCPMCPERFKRHSNLVQHRNKHHFFIKKKLKDYVCFCGEVFHSKKKFAWHNEKHDPKPKSCTQCSEKFIHTAGLTRHMRRAHNAEYLPDGRDPNSLNRVCPICKGIYLKTSMEPHMQTHLNQKAFSCTVCNKKFTTKWNLKLHKWTHAPRTQKPFKCNQCKGAFIRETDYISHMNSHKSVRPYTCNHCGAQFIRKYNCQRHVKEHENEKTYVCNVCNKSFHRSYYLKDHMRVHTGTRPYSCHICGKTSTTKSNHNKHIQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -