Sory002280.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:9440523-9454102[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00011 0.0057 16.7 1.7 1 23 249 271 249 271 0.94 2 11 1.1e-05 0.00055 19.9 0.3 1 23 277 299 277 299 0.97 3 11 0.0052 0.27 11.5 1.3 1 21 302 322 302 323 0.95 4 11 0.0001 0.0054 16.8 2.2 2 23 378 399 377 399 0.95 5 11 0.00039 0.02 15.0 1.7 2 23 406 427 406 427 0.97 6 11 4.4e-05 0.0023 18.0 0.1 1 23 433 455 433 455 0.97 7 11 6.2e-05 0.0032 17.5 7.0 2 23 461 482 461 482 0.97 8 11 0.00013 0.0066 16.5 4.8 1 23 488 510 488 510 0.94 9 11 1.3e-05 0.00068 19.7 4.7 1 23 516 538 516 538 0.97 10 11 0.11 5.9 7.3 7.9 1 23 543 565 543 565 0.98 11 11 0.00018 0.0092 16.1 0.4 3 23 576 597 575 597 0.94
Sequence Information
- Coding Sequence
- atggattTGGATATAAGATTGGAAGGAAACATAGAAGATTATTGTTTTGcttgtttaaaaatacaacaaCCTGTAGAAGATATATCAAATAATGAGCTTGTTTTGGATAATTTTAAAAGAGTGTTTAATATTGAGGTAGAATTAATATCAGGATCTAAAAAGAACCTCTGTAATatctgtttaaataaattgaacgATGCTTCAGAATTCCACACTCAACTTAGTTACTCTATTCTCTATCTGGATGAATACATAAAATCACAAAAAACTTTAATTGAGGTAAAGCATGAAGATGAAAAGAGTCAGCTTGAAGTTGATGATTATGATAATGATGAGAGATCAAATGATAATGAAGAAGTCAAAAACGAAGATTCTGATTCAGAGTCTGATAATGAACCTCTAAGTCGATTAATAGAGAAAAATGTACCATTTAATGCAAAATTGAAGAAAGTACCcactaaaattattatagaagcTATAGAGGAATACCAAAACAAATGcagagaaaattcaaattgtattGCATGTGATTTTAAAGGAGTTAGCATACGAAATTTGTCTTGTCACATGATACATAAACATAAaGAAATGAAAGCAGATTGGTGTTCCAGGTGTAATAAGCTAGTTGAAGATGTTGAAACACATAGAAAAACCCACAGTAATAAAACTTACTGTAAATTCTGCAGAAAGAATGTTACTAGATGTCATTATATGGAGCATTTAAAAAACCATGCTGGTTTGCGTTATTCTTGCAAAAAATGCCAAAAGAAATTTATCACACAGAAAGCCCTTAATGAACACAGTGCGCAGCATATTAAAGAGAAACCATTCCAATGTCCAAATTGTCCCAAATCcttcaaattattaaaaagtctgGAAGACCATATATCTTTACATGGCCGCTATACTTGTGATATGTGTAACAAACATTTCGAAATTTCCGAGATGTTGGCTTCACACCTGTGCAATGGAATCTCTATAAAAAAGTGTGATATAGATGCTTTAGATGATAAGACAAATAGCAATGATTTAAACAAGAATAGATGTTGTGTTGAGTTAAACGAAGATGTTCAAGAAGACATTAAaaataatataaatataaaaattgaagCCAAGAAGGTGGAGGATTTAACGTGTCATTTCTGCCAGAAAATTTACaaaACCGCTTACAAACTTCAAAAGCACATCGAGGGACACATGGGACTCTACACCGCCACCTGTCGGTATTGCGGTAAAGGGTTTACTTGTAATTCAGATCTGGCCAATCACGAACGGGTTCATACAAAAGAAAAGCCTTTTATCTGCAACGTTTGTGGAAAAgggtTTGTTAGTGGGGCTACTTTAAGGATTCATTTGAAACAACATACGGGTAAACCTGAGGAATGCGATTTATGCCACAAAAGATTTTGTAGAAAGTCGGAATTGAGACTGCACCAACAGAAACACAGAGggGAACGACCGTTTTTGTGTACGGAATGTGGCAAATCTTTCGCGCAAAAAAGCCACCTGACCTGCCATCTGACAATGCACAGCGACGATCGACCATATTCTTGTACGATTTGCGAGAAGAGTTTCAAAAAGAAAGAACTACTCAAGCACCACACCAAATTACATGGAGagaaaaaatttaaatgcaCAGTGTGCTATTACGAATGCCACAAAAGTTATAGGTTACAGCAGCACATGAAAATGCACGATGGAAAAGTTgacctgaaaaaaaatatttgtcaaTTGTGTAGTAAAGGGTTCAGTACTGTTTCATTACTGAACAACCACATGACAAATGTACATAATGTTATTGTgtag
- Protein Sequence
- MDLDIRLEGNIEDYCFACLKIQQPVEDISNNELVLDNFKRVFNIEVELISGSKKNLCNICLNKLNDASEFHTQLSYSILYLDEYIKSQKTLIEVKHEDEKSQLEVDDYDNDERSNDNEEVKNEDSDSESDNEPLSRLIEKNVPFNAKLKKVPTKIIIEAIEEYQNKCRENSNCIACDFKGVSIRNLSCHMIHKHKEMKADWCSRCNKLVEDVETHRKTHSNKTYCKFCRKNVTRCHYMEHLKNHAGLRYSCKKCQKKFITQKALNEHSAQHIKEKPFQCPNCPKSFKLLKSLEDHISLHGRYTCDMCNKHFEISEMLASHLCNGISIKKCDIDALDDKTNSNDLNKNRCCVELNEDVQEDIKNNINIKIEAKKVEDLTCHFCQKIYKTAYKLQKHIEGHMGLYTATCRYCGKGFTCNSDLANHERVHTKEKPFICNVCGKGFVSGATLRIHLKQHTGKPEECDLCHKRFCRKSELRLHQQKHRGERPFLCTECGKSFAQKSHLTCHLTMHSDDRPYSCTICEKSFKKKELLKHHTKLHGEKKFKCTVCYYECHKSYRLQQHMKMHDGKVDLKKNICQLCSKGFSTVSLLNNHMTNVHNVIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -