Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:770691-771939[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.059 3.1 8.1 0.9 3 23 74 91 73 91 0.92

2 9 0.00012 0.0065 16.6 1.6 1 23 94 116 94 116 0.97

3 9 6.1e-05 0.0032 17.5 0.4 1 23 122 144 122 144 0.97

4 9 0.006 0.31 11.3 3.0 1 23 148 170 148 170 0.98

5 9 0.00046 0.024 14.8 0.2 1 23 176 198 176 198 0.98

6 9 0.00041 0.021 14.9 3.8 1 23 204 227 204 227 0.93

7 9 2.4e-05 0.0012 18.8 1.5 1 20 238 257 238 258 0.96

8 9 2.7e-06 0.00014 21.8 1.2 2 23 270 291 269 291 0.97

9 9 1.4e-06 7.4e-05 22.7 0.8 1 23 297 319 297 319 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.059	3.1	8.1	0.9	3	23	74	91	73	91	0.92
2	9	0.00012	0.0065	16.6	1.6	1	23	94	116	94	116	0.97
3	9	6.1e-05	0.0032	17.5	0.4	1	23	122	144	122	144	0.97
4	9	0.006	0.31	11.3	3.0	1	23	148	170	148	170	0.98
5	9	0.00046	0.024	14.8	0.2	1	23	176	198	176	198	0.98
6	9	0.00041	0.021	14.9	3.8	1	23	204	227	204	227	0.93
7	9	2.4e-05	0.0012	18.8	1.5	1	20	238	257	238	258	0.96
8	9	2.7e-06	0.00014	21.8	1.2	2	23	270	291	269	291	0.97
9	9	1.4e-06	7.4e-05	22.7	0.8	1	23	297	319	297	319	0.98

Sequence Information

Coding Sequence: ATGTGTAGGACGCTTCCTTTAACAAAGGACtatatttcgaaaataattataaactcGAATGAGAAAAATAATTCAACATGTCAAACTCTATCTCAAGTATCCGAAGATTCGGAGAGTTCCAAAACCATAAAGAGTACGGAATCAAATAATCATCAACATAAAACAACAAAGTCCAAAAGTATTCGACAGAACCAGAAAAACCAAGATACAGAAGGATTGTGCAGTATTTGTGGACAAATTGTCGATAATCTTCGACGTCATATGAAGAATCACGGGACCTATACTTGCGACCAATGTTTTCTCAGCTTCAAATCGCAAAAGCTCCTCAATGATCACCGTGAATTGCACGAGAGTGATGTTCACTTCGACTGCGACATTtgcaaaatgatttttaaaactccGGCGCAGCTTTCGGTGCATAAGTTTACGCATATTCAAAAATATGCGTGTCCTTTTTGTAGTTTTTCCAGCAAGAACTGTAGTTCGATTAAGGAGCACATCAAGAGACacgaagaaaaatataagtatCATTGCGCGATATGCAACCAGGGcgtgccaaaccaaaccaaattacaGATCCATATGGAGATCCATACGGATGTAGCTAAACACGAGTGCGAAATTTGTCACAAGAAATTCAAAGTGGAATATTATCTCCGTATCCATAAATTACTGAACCATAAAAAAGAAGTGCTGGGCATCGAGGAATCATTTCAGTGCGAGATTTGCGGTAGAAAGTTTACTTTCGAAAAAAGCTTCAAGCGCCATTTGAGCTGCATTCACAAGGTGGGAAAGGATATGTCAGTTGAATGCTCGGTATGTAAAAAGGTTATATCTAACAGACAAACCTTGAAAAAACACATGAGGACTCATACGAGTGAAAAGGCGTTTTCCTGTGAAACGTGTGGAAAGGGGTTTTCTCTGAACACGTATTTGATTAGACACCAAAAGGTGCATTCGAGAGAAAAtggatttaaaagaaaaaatgcgtctaaaaaaTCTTGA
Protein Sequence: MCRTLPLTKDYISKIIINSNEKNNSTCQTLSQVSEDSESSKTIKSTESNNHQHKTTKSKSIRQNQKNQDTEGLCSICGQIVDNLRRHMKNHGTYTCDQCFLSFKSQKLLNDHRELHESDVHFDCDICKMIFKTPAQLSVHKFTHIQKYACPFCSFSSKNCSSIKEHIKRHEEKYKYHCAICNQGVPNQTKLQIHMEIHTDVAKHECEICHKKFKVEYYLRIHKLLNHKKEVLGIEESFQCEICGRKFTFEKSFKRHLSCIHKVGKDMSVECSVCKKVISNRQTLKKHMRTHTSEKAFSCETCGKGFSLNTYLIRHQKVHSRENGFKRKNASKKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -