Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:1646548-1652868[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.03 1.6 9.1 3.6 1 20 136 155 136 156 0.95

2 8 2e-05 0.0011 19.0 1.7 1 23 164 186 164 186 0.98

3 8 0.00072 0.038 14.2 1.4 1 23 192 214 192 214 0.97

4 8 3.1e-07 1.6e-05 24.8 0.2 1 23 220 242 220 242 0.97

5 8 1.4e-05 0.00071 19.6 1.8 1 23 248 270 248 270 0.97

6 8 0.00059 0.031 14.4 3.1 1 23 276 298 276 298 0.97

7 8 2.9e-06 0.00015 21.7 2.2 1 23 304 326 304 326 0.96

8 8 5.8e-06 0.0003 20.7 2.4 1 23 332 355 332 355 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.03	1.6	9.1	3.6	1	20	136	155	136	156	0.95
2	8	2e-05	0.0011	19.0	1.7	1	23	164	186	164	186	0.98
3	8	0.00072	0.038	14.2	1.4	1	23	192	214	192	214	0.97
4	8	3.1e-07	1.6e-05	24.8	0.2	1	23	220	242	220	242	0.97
5	8	1.4e-05	0.00071	19.6	1.8	1	23	248	270	248	270	0.97
6	8	0.00059	0.031	14.4	3.1	1	23	276	298	276	298	0.97
7	8	2.9e-06	0.00015	21.7	2.2	1	23	304	326	304	326	0.96
8	8	5.8e-06	0.0003	20.7	2.4	1	23	332	355	332	355	0.96

Sequence Information

Coding Sequence: ATGCAATCAAAAGATGCATTTTGTTTACAATGTCAGAAGTTTGCTTTGACCCCTTCGAATCGCTTAGTGCAAGACTCTTGTGGTCACAAAAAATGTCGCTCTTGTCTCTTAAACGATGTAGAACAATGTAAACAATGTATAccattaaatagaaataatactGAAAGGCAAGATGTTTGTCAAAATACTGATTACCATACCGCTGTGATTCAATGTAATGGCAAAGCAAAATTGAACTGTGATAGAATCACAGAGAATGGGGAAGGTGAAAATGAAATAGGGAATGTGAAAGAGAACCTTATAAATCAGGTGAAAAATGATGAACCAAAAAATGAGAAAACTATCACTAAGAAGAGAGCTATAACTATTCCTAGTCATGTAACTGTGAAGTCTGATCCCATTTCATATTTTTGTACGGTTTGTAATAAAACATTCCTAACTAAATCTCATGTGAAGTACCATCAATTTTGTGGAGGagAATTTAAGCCGTACAAATGTGCAACATGCTCAAAGGAATTTATAACCAAGACTCAATTGAACCTACACATGTACAGTCACGGAGATGTAAAACCATTCTCTTGCTCCATCTgtcaaaaatcatttttggAGAAGACCAAACTATCGAGGCATATGATTTTGCACTCATCAGAAAAGAAATACTCATGTCCAGAATGTGGCAAAGCATTTAAAAGCAAAGAGTCCCTAAGAGTACATTCTTTGATTCATTCGAACGAGAAACCCTATACTTGTAATGTATGCTCTTCGAAATTTAATAATTCTTCcaatttaaaaaagcatttgGTGTCCCATACTAGTGAAAGAACTCATATGTGTGATACTTGTGGAAGGAGATTTAAACTAAAATGGTCATTATCTGTGCATAAGAAGTCACATTTGAAAGTTAGATCTCACCAGTGCAATATTTGTTCCAAGTCATTTGTCAATCAAAAGGATTTGCAAAGGCATAACTTAATTCATGCAGAAACGAAAGGGTACGCTTGCGGCATCTGCAGGACGGGCTTCCGGCGCAAGGACAACCTGCACCGGCACATGAAGAACTCGCACCCAGGTAAGACGGCCGAGGTAATTGAGCGGCGCGTGCGCCGGCGCGCCACGCCCACCGAGGGCAGCGCCGGCGCGGCCGTCGTGGTCGACAACCCCAACGCCATTAACGTCATCACGACGGCGCCGCTGCTGGACAACGGCCGCGGCCGCCGACCGCCCACGCCCCGCCCCCAATCACCTAAATCTACTGATTCTAGGAGGCCGAGCGGCGCCGGCGTCAGCGTCATCAACGGACCGATCAAGCTCGCCTTTAAGACGCCGGCTTTCAAGAGCCATTACAATATTGCGAGAGACTGCAGCTTCGTACCACCTGCTCAGATTGCGAAGCCTCTACCGCTCTCCGAATCCGTAGACATTGCCAACAAGTTGCTGGAACCTAACGACTCACCTAGGATCACCAGAACTGAAACAATATCTACAGAAATCTACCATAAAATTCTTTCTCTACCCAGCCACAGCTCCGTTGAACAACCTCCAGCAAAACCAAACCCTTCACCAAAACCAAACCCTCCACCTCCAATTATCATTCCCCAAACACCTTCTTTGCTTCCTCCATATTCCAGTCCTTTTCACTACGAAACGTCATTTCAAAATCGCAAACACGCTAtgatcaaaaatatcaaatttaaagtgCCAGAACAATACACAAACCTTTTCAAACAGaacaacaacaataataataacaataaatcaACAGAAACGAGTATTAAAGATGATAGTGGTTCTTGTGCAACTTCAAACACGGAGAACACTAGTGTTATAGTGAATTCCAGCGGTCAGTCTAGTGATTTACATTGGAGAAGACGAACTTCTCAGAATCTGGTTCTAAAGAATTAA
Protein Sequence: MQSKDAFCLQCQKFALTPSNRLVQDSCGHKKCRSCLLNDVEQCKQCIPLNRNNTERQDVCQNTDYHTAVIQCNGKAKLNCDRITENGEGENEIGNVKENLINQVKNDEPKNEKTITKKRAITIPSHVTVKSDPISYFCTVCNKTFLTKSHVKYHQFCGGEFKPYKCATCSKEFITKTQLNLHMYSHGDVKPFSCSICQKSFLEKTKLSRHMILHSSEKKYSCPECGKAFKSKESLRVHSLIHSNEKPYTCNVCSSKFNNSSNLKKHLVSHTSERTHMCDTCGRRFKLKWSLSVHKKSHLKVRSHQCNICSKSFVNQKDLQRHNLIHAETKGYACGICRTGFRRKDNLHRHMKNSHPGKTAEVIERRVRRRATPTEGSAGAAVVVDNPNAINVITTAPLLDNGRGRRPPTPRPQSPKSTDSRRPSGAGVSVINGPIKLAFKTPAFKSHYNIARDCSFVPPAQIAKPLPLSESVDIANKLLEPNDSPRITRTETISTEIYHKILSLPSHSSVEQPPAKPNPSPKPNPPPPIIIPQTPSLLPPYSSPFHYETSFQNRKHAMIKNIKFKVPEQYTNLFKQNNNNNNNNKSTETSIKDDSGSCATSNTENTSVIVNSSGQSSDLHWRRRTSQNLVLKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -