Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:3946715-3952005[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.1 5.4 7.4 0.6 1 21 257 277 257 281 0.91

2 11 7.9e-06 0.00041 20.3 2.0 2 23 321 342 320 342 0.98

3 11 0.0042 0.22 11.7 1.6 1 23 348 370 348 370 0.98

4 11 0.011 0.59 10.4 1.2 2 23 376 397 375 397 0.82

5 11 0.0021 0.11 12.7 0.5 1 23 415 437 415 437 0.97

6 11 6.4e-05 0.0033 17.5 0.2 1 23 442 465 442 465 0.95

7 11 6.6e-05 0.0035 17.4 4.4 3 23 472 492 470 492 0.96

8 11 2.7e-07 1.4e-05 24.9 0.3 1 23 499 521 499 521 0.98

9 11 9.6e-06 0.0005 20.1 3.2 1 23 527 549 527 549 0.99

10 11 4.5e-06 0.00024 21.1 3.3 1 23 555 577 555 577 0.98

11 11 0.00068 0.035 14.3 1.7 1 23 584 606 584 606 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.1	5.4	7.4	0.6	1	21	257	277	257	281	0.91
2	11	7.9e-06	0.00041	20.3	2.0	2	23	321	342	320	342	0.98
3	11	0.0042	0.22	11.7	1.6	1	23	348	370	348	370	0.98
4	11	0.011	0.59	10.4	1.2	2	23	376	397	375	397	0.82
5	11	0.0021	0.11	12.7	0.5	1	23	415	437	415	437	0.97
6	11	6.4e-05	0.0033	17.5	0.2	1	23	442	465	442	465	0.95
7	11	6.6e-05	0.0035	17.4	4.4	3	23	472	492	470	492	0.96
8	11	2.7e-07	1.4e-05	24.9	0.3	1	23	499	521	499	521	0.98
9	11	9.6e-06	0.0005	20.1	3.2	1	23	527	549	527	549	0.99
10	11	4.5e-06	0.00024	21.1	3.3	1	23	555	577	555	577	0.98
11	11	0.00068	0.035	14.3	1.7	1	23	584	606	584	606	0.96

Sequence Information

Coding Sequence: ATGTTATCACGAAATTCATTCTCTAAAATATGCCGCACATGCTTAATTCAAAACGAGCTCTATTTAATTGATGAAGTTAACTGGGAAGACCTTAATCTTACAGAAATCATACAAAATTATATCCCTCTTGAGTTGAAAGAAAATGACAAACTTCCAAGAATGATGTGCAAATATTGTATTAAAGCTATGTATCAAATATATCACTTTTTTCTTAAGTGTAAGACATCAGAAGAAACTTTACTAGGAATTATTCATCAAGAAAGTCAGGATGAACTAAACAAACAAGTATTAGACAGAAAAATATCCGAAACAGAGGTTTATGAAACTAATGGAGGTAAAAATAACTTAGTGAAATCAGAAAGTGAGGATGTTGGTGATAATTATTCAGATATTCAATACACAGATGATCTATCTGATCTTGACGCTAAAGAAGTTTatgatgatattttttatgacaGTGGGAAAGAAGAAAAGAGTACTACATTGAggattataaataatattgaaacaGAAATTATACTGAATAATAAACCAGCTGATCTTGGTGATATTACGGGATTGAAAAACGGTTTAGGTGATGACATTGAGAAAGAAGAGAATACTGATGCTATAATTGCTATATCTGATATTGTGAATGTTAAAACGGAAGTTAATCACATTGATATAAAGAAAGTTATGATGAGACAAAGACACAAGGCACAGTTAATTGATCaagtaaatttattaaaaaataaaaacaagtcACATACTTTTCTAGAAGGTCCCCCATACAAATGCATTAACTGTGATTCATCTTTCCAAAGCTACGAGGAACTAGCAAAGCACCAAATTGAGACCAAACACAAAAAGTTACACAAGACCAAACACAAAAAGTTTATATGTCCCTATTGTAAAAAGGAACATACATATAGGTGTATGCATTTAGAACATGTTCGAACCCATACAGGAGAAAAGCCAAATAAATGCCCTACATGtggcaaatgctttaatttacAGAGCGTCTTAAGTAGACATATACTGACGCATATGGAAGTCAAGCCATTTAAATGTAGATTTTGTACTAAACAGTTTATACGAGGACCATATTTAATAGACCATGAAAGAAAACATACAGGGGAAAAATTAATATGCTCATTTTGTGGGAAAAGTTTTCAATCAAATTTAGTATTGTCACATCATGAAAAGGCTCATAAAGAGATGGAAAAATGTAATAAggaaccaaaaaaatataatgttaaattatttcaaTGTGATATATGTGGAAAGGAATTACATTCAATTACATCATTAAAAGAGCATGTACTGTTACATGGATCACGGGATTTTTCTTGTGAAATATGTGGAAGAGCTTacattactaaaaaaaaattggaagacCATTTTCAAATTGCTCATACAGGAATGAAACATTTGTGTCATATATGTAACAAGGAATATACACGAGAAAATGACTTGAAGACTCATATTAAATCGCATGCCAATATGCCAAATATTTATCCTtgtgaaatatgtaaaaaaacattttcacttAAAGGATCTTTAGCTCAACATATGCGAATTCATACAGGCGACACAAAATATCAATGCAAAGAGTGCCTTAAAATATGTACCACTAAGCGTAATTTAGAGAATCACTTGCGTATCCATACTGGAGATAAACCTTTTGTCTGCAATTTTTGTGGAAAAATGTGTGCTCACGAAGCCAACTTAAAACAACACATGAGACTCCATACTGCAGAGAAGAAAAAACACATTTGTGAAATATGCGGCAAAGCATTTCATTTTGGCAGCAGATTGAAAAAACATCTTGCAATTCATAATAAGAATGGACAACTTGAAATAACAGAGtag
Protein Sequence: MLSRNSFSKICRTCLIQNELYLIDEVNWEDLNLTEIIQNYIPLELKENDKLPRMMCKYCIKAMYQIYHFFLKCKTSEETLLGIIHQESQDELNKQVLDRKISETEVYETNGGKNNLVKSESEDVGDNYSDIQYTDDLSDLDAKEVYDDIFYDSGKEEKSTTLRIINNIETEIILNNKPADLGDITGLKNGLGDDIEKEENTDAIIAISDIVNVKTEVNHIDIKKVMMRQRHKAQLIDQVNLLKNKNKSHTFLEGPPYKCINCDSSFQSYEELAKHQIETKHKKLHKTKHKKFICPYCKKEHTYRCMHLEHVRTHTGEKPNKCPTCGKCFNLQSVLSRHILTHMEVKPFKCRFCTKQFIRGPYLIDHERKHTGEKLICSFCGKSFQSNLVLSHHEKAHKEMEKCNKEPKKYNVKLFQCDICGKELHSITSLKEHVLLHGSRDFSCEICGRAYITKKKLEDHFQIAHTGMKHLCHICNKEYTRENDLKTHIKSHANMPNIYPCEICKKTFSLKGSLAQHMRIHTGDTKYQCKECLKICTTKRNLENHLRIHTGDKPFVCNFCGKMCAHEANLKQHMRLHTAEKKKHICEICGKAFHFGSRLKKHLAIHNKNGQLEITE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -