Sory006656.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:830864-842318[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00031 0.016 15.3 0.3 2 23 176 198 175 198 0.96 2 19 0.12 6.1 7.2 3.4 1 20 389 408 389 410 0.94 3 19 1.7 91 3.5 4.4 1 23 439 462 439 462 0.95 4 19 0.16 8.5 6.8 2.0 1 19 495 513 495 518 0.92 5 19 0.00039 0.02 15.0 2.2 2 23 606 627 605 627 0.97 6 19 1 54 4.2 0.1 1 13 647 659 647 669 0.79 7 19 0.00035 0.018 15.2 0.2 2 23 673 694 672 694 0.96 8 19 0.00059 0.031 14.4 0.1 2 20 729 747 728 749 0.92 9 19 0.07 3.6 7.9 1.5 1 23 792 815 792 815 0.96 10 19 0.018 0.93 9.8 2.0 2 23 828 849 827 849 0.97 11 19 0.0073 0.38 11.0 6.3 1 21 887 907 887 909 0.95 12 19 0.0096 0.5 10.6 1.4 2 23 922 944 921 944 0.94 13 19 0.018 0.93 9.8 1.1 3 23 984 1005 983 1005 0.95 14 19 0.0044 0.23 11.7 0.1 1 23 1026 1048 1026 1048 0.91 15 19 0.55 29 5.1 0.1 1 23 1103 1126 1103 1126 0.94 16 19 0.0028 0.15 12.3 1.0 2 23 1137 1158 1137 1158 0.97 17 19 0.0061 0.32 11.2 4.8 1 23 1176 1198 1176 1199 0.96 18 19 7.3e-06 0.00038 20.4 1.2 1 23 1207 1229 1207 1229 0.98 19 19 0.00024 0.012 15.7 0.3 1 23 1255 1278 1255 1278 0.94
Sequence Information
- Coding Sequence
- ATGGCGGAACAACATCGAGGCGCAGATTACCTTGCCGTCTGCAGACTGTGCCTCTCCGATAGAACGGACTCGCTAAAATCCATCTACGACATCGCCTTAGGTCCGAACCGTCTTCCACAGAAGATTCTACAACTGTTGGCCGTCCAGGTTAACAAGCTAGACAAGATATCGACGCTCATTTGCAATGATTGCATCATTAGACTGGATACCTTTCACGCATATAAGCGGGAATGCCACAGAAACCAGACAAAATTGGCAGAATGGTTGAACAAAAACGCCGGTTGCAATTCAAATGAAATGAGTTTTCCCATCAAACCGGAACCGGATGATTTCGAGTTCAACGAAGTGGGCCTGGTGAACGGAAATCACGTGAGCTGGCCCGTCAAAATCGAAGTAGACGTGGACGAAGACATGGACGAAGAATACAACGATCTACCACCTCACCTCCTTCCTAACAGTTTCGACAACCACGGCGAGCCATTCGTGGTTAATTCACCCACTGGAAACTATTCAGAAGAAGAAACAAGATGTCCGGATTGCGGCCGACTGTTCGGCACAATTCAGAACATGAGGAGGCATCAGAACGTGCTCCATCGCAAGGATAAAAGAACGCCAATGAACGAAATTAAGAAAGCCAGCGACCCCGTGGCCGTGACAGATCAACCCAAAGATCTGTCAGCTGAAACCGAGAAGGACATAGCAATAGAAAACACCTCTGTTGTCCCTTCTCTTGATACTTCTGGCGAAGTACCACCTGAAAATAATGACAGCTCCTTGAATATGTCTGAAGAGAACACTGtttcagaAGTAAATAACACCGAAGAAACGGAAAAATGTCAAGAAGAACAACAAGAACAGACTGAAGATGAACCCAAAAATCCTGAAGAAACAGAACCCGAAAAAACTCAAGAAGAACCAACCGAAAACACTCCAGAAAGTGACCAACAAAAAATCCAGTTCGCCGCCGGCTTAAAACTGGTTCAAAAAGACTCCACCCCCATAGAATGCGAACCTTTATCCAAAATCGAGTTGAGCTACATTGACAAATGTAAGGCTATGGTTTCAATGTTCCACACTCTTCAATGCGCCTGCCACAATGTCCAGCACAAAACCTCAAGAAACCTTCACTCTCACCTTCGAGAGCTACGCATCTGGTTTCCTCTTTTCACTTGCTACAACTGTATGATTTCTTTCACTGACCGATCAACGTTCACCAAACACCACACCAAATGCACCAGAACTCAATTCGAGACCTTGATCAAGCTGTCAAACCTCAAAAAAAGAAGCGAAGTCAAGACCAGGCTGTACGAAAACTACAAATGTAACCGTTGTCGCTTTTTGTACAGTTTCTACGAAGATTTTTGCAAACATATAGAAGAAGATCATGCGTCTGGTTCGCCTCCATTTTACTGTTCATGCCGATACGTTTTTGACACTTTGGAAGAATACAGGAACCACTGTTACAACTCTTGCATCCTTTCATACTATTGTGACATATGTTTCATCACTACCACCACGCAGGAAGAGTTTGTGAAACACTGTCAAGAACTCCACGACTCTTCAGAAGGTTTTGTACTTCTTCAAGAGGACGGATACAGTCCTAGAAAGCCATTCTCCCACCACAAGGAAGTTGATACTGAAGCAAACGTAGTTGAAGGAAaaagggagagaaaaaaatcgGTGAAACCCCCGATTTTAGTGCAGATATACGACTCGGAGATCCCTCCGGAACCGCTAGACATGGCGCCGAAAACAGTGTTCAAGAAGATGCTAAACGAAGCTGTGAAATTTAACCCGACCTGGAAAAACCCATCCGAGTGTCCTTTGTGTCACAAAGTGTACGCGAGCATCCATAACATGGCGAGACATTACAAAACTCACCTGGAGAAAAACGAAGTTCCTATGCCAGTTCAAGCGAGAGAAGAAGACGATTCGTTGTACAGCTGTCCGGATTGTGGAGGAATGTACCCCACAGCTAAATGGGCTAAACATTTGGAAGAAAAACATCCGCCCAAACCTTGCGGAGATTGCGACAAGATGTTCCAGTTCCAAGGCGAATTAGAGCAACACCGCAGCGTTCACTTGAACCTGAAAATTCACAGAGACTCCAAAACACATTCCTACAAGTCCACCATGCTGAGTCCTGTGGGTGAAGTTAATGGTTTATTGGGTGAGGTGATGGTTATGTGCGAACTCTGTGACACGATGTTTAAGAGTAAGGAAGAGTTGAAGAACCACAAGCTGGTTTGCGAAGATAGATCTAACAAGTCTCAGTCGGGAAGTTCGTTGAAAGATGACGGAGATACTATGGATATTGAAGGAATGCCTGTTCTTGAAACCGTCGAAAAGACAGAGGAGAAAAAGGACGACGGATTCGTCTGTACTTCCTGCCAGAAAGTGTACCTTAGCGTGAAAACTTTGAAAGAGCACATGAAGAACAAACACGGAATTTTGTACAAGAGAAAAAACGATTTCCCGAAAAAGTGCCAGTACTGCGACAGGATGTGCACTACCGGAGCAGCTCTGTACCTCCACACCCAAATGCACGAGCGCATGACCTTAAACGACTTGAAATCAGACAAATCTGCCATAGCCAAAGCAAAAAAGAAAGCCTCATTAGAGAAAGAAGCTGATCCTGATGAGGAAGGAGGGTCTTACCACACTTGCAAGAGGTGTTTCAAAGTATTCGCAACCAAAGGAAAATTACGGGACCACATGAAATGTCACGGTGTAAATCCAGCCAAGAaaccatcgaaaaaaatcacCTGCAACATCTGCCATGTTTGTCTGGATAACGCTGATGAATTGGAGAAGCATAAGTCATCAGAACATTCTGAAGGATTGGACGGTATGCCTCAGCTGGTAAACGAGATGGAGGTTGATCAAAAAGACGACGataaagaagagaaaaatacGACTGAAGTTACCAAGATCAAAAACACAAATCTGTGTAAATACTGTAAGGTTACTTTCGATAATTTTGCTGAGTTTGCGCAACACATGCACGAGGAACATGACGAAACTGCTAAACCTAAGGTTAGTAGAATCAAACGAAAAGACTTGGGAGATAGGAGGTATAAATGTGGCATTTGCAAGAAAGCTTTTGTAACTGTCTTAGCCCTAAACTCCCACGCGGGCTGGCACAAACGCATTTTCGCTAAAAAGAGACTACTAAGTCAATCAGCTCCGGAAACTAACACGGCCCACGGTGTGATAGCTTCAAAAATCGTCAGACAGTCCAAAGTTTTTAAGAAGAAAATCACTCCCAAACCTCAGCAACAACAACCTGCGCAACAAGCTTCCAAATTCCAATGCAGTACGTGTTCTGCGCAGCTACCCAACGACACGGCACTTCAAATCCATATCCTGGAAAAACACAGGAGTATGGATGAGGTTATGTTAGTCCCGAGATGCGAGACGTGCAATCAGGATTTCGCCACTCAAAATGAATACGAAATGCACCAAAGATTTCATGACTTTCTCGAGCGACAGAAGAAAAATAGCCAGCAGgttatcattaaaaaatatccCTGTGAACATTGCAGTTCTGGATTCAGTAGAATTGACACTCTTCATACTCATATAAGACAGCATCATCCAGAACACGCTAAAGTAGAGTTTAAATGTACCCAGTGTGATAGAGTTTTCGAAAAACAAAACTCTCTAACCATTCACTTGAAAGTTCACGAAAAACAGAAGGCTGCTTTGACGAACGGGGGTAGTTCTAGTACTAGTACTTCTTCTGGTAGTACGGGAAAAGTATTTTCGTGTTCGATCTGTAGTATGGTCTTCAGTTATGCCAAGGATCTGCGAACGCACACGATCAACGCGCATCCGTTTTGA
- Protein Sequence
- MAEQHRGADYLAVCRLCLSDRTDSLKSIYDIALGPNRLPQKILQLLAVQVNKLDKISTLICNDCIIRLDTFHAYKRECHRNQTKLAEWLNKNAGCNSNEMSFPIKPEPDDFEFNEVGLVNGNHVSWPVKIEVDVDEDMDEEYNDLPPHLLPNSFDNHGEPFVVNSPTGNYSEEETRCPDCGRLFGTIQNMRRHQNVLHRKDKRTPMNEIKKASDPVAVTDQPKDLSAETEKDIAIENTSVVPSLDTSGEVPPENNDSSLNMSEENTVSEVNNTEETEKCQEEQQEQTEDEPKNPEETEPEKTQEEPTENTPESDQQKIQFAAGLKLVQKDSTPIECEPLSKIELSYIDKCKAMVSMFHTLQCACHNVQHKTSRNLHSHLRELRIWFPLFTCYNCMISFTDRSTFTKHHTKCTRTQFETLIKLSNLKKRSEVKTRLYENYKCNRCRFLYSFYEDFCKHIEEDHASGSPPFYCSCRYVFDTLEEYRNHCYNSCILSYYCDICFITTTTQEEFVKHCQELHDSSEGFVLLQEDGYSPRKPFSHHKEVDTEANVVEGKRERKKSVKPPILVQIYDSEIPPEPLDMAPKTVFKKMLNEAVKFNPTWKNPSECPLCHKVYASIHNMARHYKTHLEKNEVPMPVQAREEDDSLYSCPDCGGMYPTAKWAKHLEEKHPPKPCGDCDKMFQFQGELEQHRSVHLNLKIHRDSKTHSYKSTMLSPVGEVNGLLGEVMVMCELCDTMFKSKEELKNHKLVCEDRSNKSQSGSSLKDDGDTMDIEGMPVLETVEKTEEKKDDGFVCTSCQKVYLSVKTLKEHMKNKHGILYKRKNDFPKKCQYCDRMCTTGAALYLHTQMHERMTLNDLKSDKSAIAKAKKKASLEKEADPDEEGGSYHTCKRCFKVFATKGKLRDHMKCHGVNPAKKPSKKITCNICHVCLDNADELEKHKSSEHSEGLDGMPQLVNEMEVDQKDDDKEEKNTTEVTKIKNTNLCKYCKVTFDNFAEFAQHMHEEHDETAKPKVSRIKRKDLGDRRYKCGICKKAFVTVLALNSHAGWHKRIFAKKRLLSQSAPETNTAHGVIASKIVRQSKVFKKKITPKPQQQQPAQQASKFQCSTCSAQLPNDTALQIHILEKHRSMDEVMLVPRCETCNQDFATQNEYEMHQRFHDFLERQKKNSQQVIIKKYPCEHCSSGFSRIDTLHTHIRQHHPEHAKVEFKCTQCDRVFEKQNSLTIHLKVHEKQKAALTNGGSSSTSTSSGSTGKVFSCSICSMVFSYAKDLRTHTINAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352037;
- 90% Identity
- iTF_01352037;
- 80% Identity
- -