Sory000314.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- prdm10
- Assembly
- GCA_002938485.2
- Location
- NW:2557262-2575262[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00077 0.04 14.1 0.1 2 23 443 464 442 464 0.95 2 12 0.00017 0.0086 16.2 0.4 1 23 536 558 536 558 0.96 3 12 0.0011 0.057 13.6 1.3 1 23 569 591 569 591 0.97 4 12 6.5e-07 3.4e-05 23.7 0.8 2 23 604 625 603 625 0.97 5 12 0.0023 0.12 12.6 1.4 2 23 634 655 633 655 0.96 6 12 0.00078 0.041 14.1 0.4 1 20 662 681 662 684 0.92 7 12 0.00014 0.0075 16.4 3.6 1 23 690 713 690 713 0.98 8 12 0.00022 0.011 15.8 8.4 1 23 718 740 718 740 0.98 9 12 8.3e-06 0.00043 20.3 0.9 1 23 746 769 746 769 0.94 10 12 0.003 0.15 12.2 2.3 1 23 802 825 802 825 0.97 11 12 0.0077 0.4 10.9 4.8 1 23 847 870 847 870 0.97 12 12 0.015 0.79 10.0 1.9 3 23 916 937 915 937 0.96
Sequence Information
- Coding Sequence
- ATGGATATAGTTAACGATTCCATTGAAGACCCAAACCAAATTCAGGACTTGAGATCAGCTAACTGTGACGACTGGTCTAATGATGAGGGCCCTAATAACAATTCAACTTTACTTTACATTGCTgTGGAATACATTGAAAAACAGAAATCCACAAACATCATCGAAACTTCTTCTCAGGCGACCCAAGATACTTTTACGGACTTTGTGACCCCGCAAGTAAGTCCCTTGGACCCGAACATGAGCTGTACAGCTCAATATAGTCCCGTACCAGTTCAATATGAAGAAAATCCTGACAACCAAATCAGTCCGATTGTTATTCAACAGTTTATTACTGAGGAGAGTGACACAGGCCAGGATTTTTCTACTAGCAATACTTTGGACAGTATTTCAAGCGAAATACCGGCAGTTTTGTGCAATAATGAATTAAGAGAGACTGAAAATCAATATTTTGAAATGGTTCAGGATGACACGATCAATATTTGTAATGATGGAGGGCTAGAACTTGTACCTGAGGCTGAACAAGGGGTTGAGTTATTAATTACTGACCATACTACAGgcaTTTCCTATAGTGTAAACTCTCAACAACTGATGGTTGAGCATTGTCTAGAGGATAatcaaaattttttggaaaccATTGCACCCGAACCATTGTTAGAGTCTGATTTGCTTGAGCTTGATGAAAATACTGAGCTAAATAATAGCTCAGAGATTCCGAATATAGTGACATCTTTAAATGAAGAAACTATGAATACTTTGATACAATGTTTGTCGAATAAAACTATAGAAATTAATGACGCAAACCCTTGTAAGATCAATACCAGGAGTAGtaatcaaaataaagttaacCCTGAAGAGGAATTATtgtCGTGTGTTTATAGTATAATGGATAAACCGGTATTGTCCAGAGCTAGGGCATCTTTACCTGAATCATATTTATGTATCAACAGGGTCAATGAAGAAAATGGTGTTTTTGCTAAGAAACTGATACCGAAAAAAACCCAGTTTGGACCTCTGGAAGGTTCCTTATTCCCTGTTAGTGAGTGTGTGaataataaagataaaaacCTTTGGTTTCATATATCAATCAACGGGAATGAGTATGTGGTTGATGTTACTGATGAAAGTTTATCAAATTGGATGATTTTCGTTCGTAAAGCTGAAACTTTcgatgaacataacctaatttTAACACAGGATGGAAACGGACTGTACTTTACGACAATTAGACATGTCAAGCCCAAGGAAGAATTAAAGtttcaCTACAGTCACAGCTACGCCCAACAATTCAATTTGGAACTTCTGAAACCCGTAATAAAGGATACCTGGCCGTGTTTCGAGTGTTCTGCGAAGTTCCCGACTTCGGAAGAACTGCAGAAACACCTAGACGTTCACGATGAAGAGGGAGACGAAAACACGAGACCCAAGAGGAGGTACAGGAGAAGAATGATGGTGTTAAGGAAGTCCCAGAGCGATATAGTCGAATGTAACATGTGCCAGGAACCGTTTGGCTCCACTGTCAGTTTCAGTACTTTGAAGAACCACTTGTCCAGGAAGCACAAGTTCAGCGGCGTGAAGATTGGcgattatttttcgatttttccgaatTATGCTTGTAATTACTGCGACATGAGGTTCAGAAGGGAGATCCTGCTGAACATCCATCGGCTGGAGCACGATCCCGAGTTGTCTGTGGATCAGATGAACCACGTGTGCCCGCAGTGTTTGCGGAAATTTCCTACTCGGAAGCAGCTAGTGTTGCACGTCACTACGCACGCCCTGCCCAAGAAAGTGACCAATGAGGAGAGCGTGAAATGTAACGTGTGCTACAAGTCGTTTGCCAGGAAGGAAAGTTTGCAAaaacatATGTTGGTTCACGGATCCGAAGAGACCAAACCCCTGAAATGCGACAAGTGCGAAAAACGTTTTTTAACTCGCTCGGCCCTAACAAGCCACGCAAAGAACCACCTCACGGACAGGAAAAACTTCCAGTGCCCCATTTGCAACGAGAGCTTCTACCAGGTGATGAAGCTGAAGCTCCACATCCCCAAACACGCTCAAGACAACCAGTACACCTGTCCCTACTGCAAGAAAACCTTCAGGAAGTACAGCATCATCCGGAAGCACATCAGGACGTTCCACAGGGAACCTAAGTTTCATTGCGAACATTGCACCAAAATGTACTCAAGTCTCGAGCATTTGAAGAAGCACATGCTGAAACATTCGGATCACAAGGAGTTTTTGTGCGCGGACTGTGGCAAGCAGTTCAAGAGGAAGGATAAGTTGGTGGAGCATATCAGGAACAAGCATCCTGTGGGTAAGAAAAGTGTTGGGGGTGAAGTGCCCATTCCGAAAAAGAAGAGATCGACAGTTAAATACGAACCAGGCGATTACGAGAGGTATATTTACAAGTGTCACTCGTGCCGTGTGGGGTTCAAAAGACGTGggATGTTAGTGAACCATCTCGCAAAAAAACATCCCGAAGTGAACCCGGACACTGTTCCCGAGCTGAGCTTGCCCATTTTGCAAACGACCAAGGATTACTACTGCCAGTACTGCGAAAAAATCTACAAGAGTAGTTCTAAGAGGAAAATCCACATTTTGAAGTGTCATCCTGGTGCTGAGCTTCCTGTAAACGTTAGaaaaccgAAAGATGAAAATGAGGAGACAAAAACAGAGGAAACATCCGCGACACAGGCAACGTCCTTCTCCCTTACGGTGGGCAGTGTCCCCAGGATACCTAAGAACTGTCGGTGGTGTCACAAACAGTACGCCAGCAAGGCAAAATTGATACAGCACGCCAAGAAGGAACATCCAGACAAATCTGTCAAAGAACTGATGCGATCCCTAAAAGTGGCCAAACCTAAAGATACTACAGCTCAACttaCTGATGATAACGTGACACTGCTagaaaaatccaaagaaatcttAGCCCAAAGTAAGGAGTATGTTAACGTAGAAAACGTCGATGTAAAAGATTTCGCTTCGACAGAGTTAACTGTCACTGATGACATATGTCTAACCAGGACGGCCAACTTAACTACCGACGGTACCATTACGGTACCGCTGGATTGTCTACACACTAGTGACATGGAAACATTCGGGCAACTGTCGATCGAAGACGGTATTTTGGATAGAAGTGACTTAAGTCACAGTTCCCACCTTTATCATTTGTTAGAAGCGACCAATAACGgATTATTACCGCCACCCTGA
- Protein Sequence
- MDIVNDSIEDPNQIQDLRSANCDDWSNDEGPNNNSTLLYIAVEYIEKQKSTNIIETSSQATQDTFTDFVTPQVSPLDPNMSCTAQYSPVPVQYEENPDNQISPIVIQQFITEESDTGQDFSTSNTLDSISSEIPAVLCNNELRETENQYFEMVQDDTINICNDGGLELVPEAEQGVELLITDHTTGISYSVNSQQLMVEHCLEDNQNFLETIAPEPLLESDLLELDENTELNNSSEIPNIVTSLNEETMNTLIQCLSNKTIEINDANPCKINTRSSNQNKVNPEEELLSCVYSIMDKPVLSRARASLPESYLCINRVNEENGVFAKKLIPKKTQFGPLEGSLFPVSECVNNKDKNLWFHISINGNEYVVDVTDESLSNWMIFVRKAETFDEHNLILTQDGNGLYFTTIRHVKPKEELKFHYSHSYAQQFNLELLKPVIKDTWPCFECSAKFPTSEELQKHLDVHDEEGDENTRPKRRYRRRMMVLRKSQSDIVECNMCQEPFGSTVSFSTLKNHLSRKHKFSGVKIGDYFSIFPNYACNYCDMRFRREILLNIHRLEHDPELSVDQMNHVCPQCLRKFPTRKQLVLHVTTHALPKKVTNEESVKCNVCYKSFARKESLQKHMLVHGSEETKPLKCDKCEKRFLTRSALTSHAKNHLTDRKNFQCPICNESFYQVMKLKLHIPKHAQDNQYTCPYCKKTFRKYSIIRKHIRTFHREPKFHCEHCTKMYSSLEHLKKHMLKHSDHKEFLCADCGKQFKRKDKLVEHIRNKHPVGKKSVGGEVPIPKKKRSTVKYEPGDYERYIYKCHSCRVGFKRRGMLVNHLAKKHPEVNPDTVPELSLPILQTTKDYYCQYCEKIYKSSSKRKIHILKCHPGAELPVNVRKPKDENEETKTEETSATQATSFSLTVGSVPRIPKNCRWCHKQYASKAKLIQHAKKEHPDKSVKELMRSLKVAKPKDTTAQLTDDNVTLLEKSKEILAQSKEYVNVENVDVKDFASTELTVTDDICLTRTANLTTDGTITVPLDCLHTSDMETFGQLSIEDGILDRSDLSHSSHLYHLLEATNNGLLPPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -