Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:3189716-3227569[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 9.5e-06 0.00049 20.1 2.5 2 23 296 317 295 317 0.96

2 10 1.8e-06 9.1e-05 22.4 3.1 1 23 323 345 323 345 0.98

3 10 0.00089 0.046 13.9 1.0 1 23 350 373 350 373 0.94

4 10 4.8e-06 0.00025 21.0 0.5 2 23 394 415 393 415 0.97

5 10 0.00049 0.026 14.7 0.9 1 23 421 444 421 444 0.96

6 10 3.6e-06 0.00019 21.4 1.3 1 23 447 469 447 469 0.99

7 10 6.7e-07 3.5e-05 23.7 0.5 1 23 477 499 477 499 0.98

8 10 5.3e-07 2.7e-05 24.0 3.2 1 23 505 527 505 527 0.97

9 10 0.00013 0.007 16.5 2.6 1 23 533 555 533 555 0.99

10 10 0.57 30 5.0 3.7 1 23 561 584 561 584 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	9.5e-06	0.00049	20.1	2.5	2	23	296	317	295	317	0.96
2	10	1.8e-06	9.1e-05	22.4	3.1	1	23	323	345	323	345	0.98
3	10	0.00089	0.046	13.9	1.0	1	23	350	373	350	373	0.94
4	10	4.8e-06	0.00025	21.0	0.5	2	23	394	415	393	415	0.97
5	10	0.00049	0.026	14.7	0.9	1	23	421	444	421	444	0.96
6	10	3.6e-06	0.00019	21.4	1.3	1	23	447	469	447	469	0.99
7	10	6.7e-07	3.5e-05	23.7	0.5	1	23	477	499	477	499	0.98
8	10	5.3e-07	2.7e-05	24.0	3.2	1	23	505	527	505	527	0.97
9	10	0.00013	0.007	16.5	2.6	1	23	533	555	533	555	0.99
10	10	0.57	30	5.0	3.7	1	23	561	584	561	584	0.93

Sequence Information

Coding Sequence: ATGCAGAAATACAATTCAGGTGTTGGATTGAACAATTTTGATACAATTTGTAGAGCTTGTTTAATTGAAAGCGCCGAATTACAACttatacatgacataaatttaGGAGTACCAAATAATGAAACGAAGCTTGATATAATAGCTTTGTTTAAAAAGTATTGTGATATAGATgTAAATCATTTAGACAACAAACCACAGAAAATATGCAAATTATGTATATCACTATTTTCACAGTTTTACTGTTTTCTTGAAAAAGTAACACTTTCAAATCAAATATTTGATACACTTTTGGGTAATGTAGTCTCTCAGAATAGTTGTTTGGATTTAAAAGATGAAATTGAAGATATAAAATCAGAAGTACTCAgtgaaaaacaaataattttgaataataaaattgaagATGGCAGTGAAACTTATATTAGTGATACTGGTGAACAATACACGAATAGCGACAATGATTTAGATTGTAAACCATCAAAAAATGAGTTCAGTAGTGAAGATAGTAATGTTAAATTAGAAGTATCAACTAATAAATTGAAagtagaaagaaaaaaatcaaaGTCCAAAGAACTGAAATGTATAAGCAACGTAAAATTCccaataaaaaatctaaaagaaacGCAATATGATGGGGCATTTAGTTGCAAACTGTGTGATAATAAAGAATTAGGAGAGATCGATACCGTTATAGAGCATTATGAAAAGTATCACCTTGAAGACTTACAATGCATCCTTTGTCTTAGGACATTTACCAAACACGTACCATTATTTCATATTGGTTTACATTCTAAAAAAAGCTATGTGTGTAGACCTTGTCGGCTGCTGTTTCGAACTAAAGAACAGTATGACGATCACAACATGAAGTATGACCATGATAAATCTTTATCTTGTCGAATATGTGGGAAAAGCTTTACACGAAACTACAAAAAGaataagcATATGCTGAGCCACTTAAAAGAAAAGAATTATTCTTGCAGTAAATGTGGGAAAACATTTACTTATAAGACAAGTTTGGtaagacattttaaaattcattttggTAAAAGATTTCTTTGTTCTTCTTGCGGAAATGCGTACACCACTAAGTTTATGTTACAAAGACATTATAATATAATGCATAAAAATGTGGATGTTGATGGAAAACCACTACCAAAACCACCTCCAAAGCCAGTCCATCTCCAGTGTGAATTCTGTGGTGAGGTATTTACAACCAAGTATGGTTATGGTAGACATATTCGAAGACATCCCGAGTTCAATCAACATAAATGTAAAATTTGCTCTGCCATGTATGATAACAAGGATCAGTTGGATGAACATATGGAAattaaacataataaatatactTGTGAAGTATGCGGAAGACGTTTCCCATTTGAAAGCGAACTCAAAACACATTTTAGAAAACACGAAGATATGGAAATGGCCAGATTTCGgtgtGAAATATGCGGAAAAACTGCTCGTACCTCAACGCAGCTGAAAGTTCATTTGAGGATTCATACAGGGGAACGGCCCTTTTCTTGTAAAATTTGTGGGAAATCATTTAAACAAACTGCCCATCTAAaggttCATATGTATCAACATACTGGAAAAATgccatttaaatgtaaaatatgtgaaaaaacTTTTCCATTCCAGCACATAATGGAAATACATATGCGTACACAcactggcGAGAAACCTTTTCAGTGTATTTCCTGTGGCAACGCTTATCATGATAAGACAACAATGCAAAAACATCAGAAGAAAAAGCACCCTGAAATGCCTTTGCAAAAAGTTGTAAGAAGtgaatataaaatgacaaaatTAATGTAG
Protein Sequence: MQKYNSGVGLNNFDTICRACLIESAELQLIHDINLGVPNNETKLDIIALFKKYCDIDVNHLDNKPQKICKLCISLFSQFYCFLEKVTLSNQIFDTLLGNVVSQNSCLDLKDEIEDIKSEVLSEKQIILNNKIEDGSETYISDTGEQYTNSDNDLDCKPSKNEFSSEDSNVKLEVSTNKLKVERKKSKSKELKCISNVKFPIKNLKETQYDGAFSCKLCDNKELGEIDTVIEHYEKYHLEDLQCILCLRTFTKHVPLFHIGLHSKKSYVCRPCRLLFRTKEQYDDHNMKYDHDKSLSCRICGKSFTRNYKKNKHMLSHLKEKNYSCSKCGKTFTYKTSLVRHFKIHFGKRFLCSSCGNAYTTKFMLQRHYNIMHKNVDVDGKPLPKPPPKPVHLQCEFCGEVFTTKYGYGRHIRRHPEFNQHKCKICSAMYDNKDQLDEHMEIKHNKYTCEVCGRRFPFESELKTHFRKHEDMEMARFRCEICGKTARTSTQLKVHLRIHTGERPFSCKICGKSFKQTAHLKVHMYQHTGKMPFKCKICEKTFPFQHIMEIHMRTHTGEKPFQCISCGNAYHDKTTMQKHQKKKHPEMPLQKVVRSEYKMTKLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -