Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:275637-285068[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.08 4.2 7.7 0.2 1 21 263 283 263 284 0.96

2 11 3.4e-05 0.0018 18.3 0.8 3 23 332 353 331 353 0.95

3 11 0.00047 0.024 14.8 4.3 1 23 366 388 366 388 0.97

4 11 9.3e-05 0.0048 17.0 0.2 2 23 395 416 394 416 0.97

5 11 4.1e-05 0.0022 18.1 1.4 3 23 424 444 422 444 0.98

6 11 1.2e-05 0.00061 19.8 2.8 1 23 450 472 450 472 0.96

7 11 0.00022 0.011 15.8 4.2 1 23 478 500 478 500 0.97

8 11 0.00056 0.029 14.5 0.5 1 23 506 528 506 528 0.97

9 11 4.6e-06 0.00024 21.1 2.1 1 23 534 556 534 556 0.99

10 11 0.00028 0.015 15.4 1.0 1 23 562 584 562 584 0.97

11 11 0.0013 0.068 13.4 3.8 1 23 590 613 590 613 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.08	4.2	7.7	0.2	1	21	263	283	263	284	0.96
2	11	3.4e-05	0.0018	18.3	0.8	3	23	332	353	331	353	0.95
3	11	0.00047	0.024	14.8	4.3	1	23	366	388	366	388	0.97
4	11	9.3e-05	0.0048	17.0	0.2	2	23	395	416	394	416	0.97
5	11	4.1e-05	0.0022	18.1	1.4	3	23	424	444	422	444	0.98
6	11	1.2e-05	0.00061	19.8	2.8	1	23	450	472	450	472	0.96
7	11	0.00022	0.011	15.8	4.2	1	23	478	500	478	500	0.97
8	11	0.00056	0.029	14.5	0.5	1	23	506	528	506	528	0.97
9	11	4.6e-06	0.00024	21.1	2.1	1	23	534	556	534	556	0.99
10	11	0.00028	0.015	15.4	1.0	1	23	562	584	562	584	0.97
11	11	0.0013	0.068	13.4	3.8	1	23	590	613	590	613	0.95

Sequence Information

Coding Sequence: atgaAACTAGACAAAATATGCCGAACTTGCTTACAGGAAAAACAAGATTTGAAGTCCATATTTGATGCATACATTCCAAATATGATAATGGCACTTACAACTGTACAGGTAGTGCAAGGGGACGGACTACCCCATCAAATATGCACACAGTGTCTTAGAGATGTCAGTAAAGCATATGCATTTAGACAAAAATGTGAAAAGTCTGATACCACTGTACGGaattatattaacattaatagtTTAAATACAAACTTGAGTCAGCTCTGTGATCTTCCTGTCCATAATAATTTTGGAAATGATACCTTAATGCCTACCTgcaataatgataataatattttaaacaatcAAGTATTGCCTAATTATAATACTTTATCTAATGGAAGTTTATTATCGAATAGTGCATTAAATAATAGCAGTAATATGATTGGATTTCCTAATCCAGTTAATACGTTAGATAATAATTTATCTCAAAACCATCTGAATAACATCGAAAACAATTTTATGGGAAATATTAACGAAGTTAGGaatgatttttttggaaatggaGACATGTTGCAGCAAAGTTCTTTTTTTCAAGATATATTCAGTGACCCGACTAGTGAATcttttgtagaaaattttactAATAGTCAAAATAATGCAGttgtaCCAGATTTTGTTGAGACAATGCAGAGTTTACAAACGATTGCTGAGCAGTGTTTACCTGAATCATGGGAAAATGAAAATCAGTCTTGTCAAATAGGTAATCAAGAAACAGCAAACAATTTTGATTTAGTAGACGATTTATTTAAGTGCCagttttgtgaaaatatttataaagATGCGTGGTCGTTAGAcgatcatataaaaaatcaaaactgtcaagacaaatatttttgttcCAACATTACCAACGAATTAACGAAAAGTATGTTATTAGAATATACCTTTGATACCAATTCTAAAGATAATcttatgtttgaaaatattgagCCTAAGTACCAGAATTTACTATGTGATGTATGTGATAGAACATTTACTgaacaaaaatatctgaaaaaacatttaaaagatATACATTTTATTGATACAGCTTGTATACATGATGAGAAAAAGCATAGCTGCACAATTTGCTTTAAAAGaTTTAGACAATATAAAGTTCTCTTATTACATATGCGTTCACATACGGGTGAAAGGCCTCTAAAATGTGATATATGTTTAAAAACTTTTGCTTTGCCAAGTAGTTTAAGGATCCATAAGCAGGTTCATGCACAAGAGAAACAGTACGGATGTCACATTTGTCCGAAAAAGTTTAAGTTAAAACCTACTTTAAATAGCCATATTTTAACACATTCAGGAGAGAGACCtcatatctgtcaaaattgcGGTAAAAGTTTTGCCACatttacaaatttaaaaatccaCAAGAGATTGCATACAGGAGTGAAGCCTTTCTTTTGTACATTCTGCAGTAAATCATATAATTCTAGTACACAATTAAAAAAGCACAACAGGATCCACACAGGAGAAAAGCCTTATACATGTTGGATTTGTGGAGAGGGCTTTAGAAGAAAAGAAACAAGGGATACTCATGCTAGGTATCATACAGGCGAAAGGCCGTACAGTTGCAAGATTTGCCAGAAAAAGTATATAGCAGCTAGCCATTTAAGGGATCATATGAGGAGTCACGAAGACGACAAAAAATTTAACTGTATGATGTGTcaaaagaaatttcaagatatgAGGAGTTTGAAGGCCCACATTGCAACACATACCGGACAAAAGTCATATCTATGTAGATTTTGTGGCAAtcgttttgtttttaaaagcgGCTTAAATACCCATCTAAGAACATGCCACAAGGACCAAAATACTCAGAATAAAAATAGTACTGATTAA
Protein Sequence: MKLDKICRTCLQEKQDLKSIFDAYIPNMIMALTTVQVVQGDGLPHQICTQCLRDVSKAYAFRQKCEKSDTTVRNYININSLNTNLSQLCDLPVHNNFGNDTLMPTCNNDNNILNNQVLPNYNTLSNGSLLSNSALNNSSNMIGFPNPVNTLDNNLSQNHLNNIENNFMGNINEVRNDFFGNGDMLQQSSFFQDIFSDPTSESFVENFTNSQNNAVVPDFVETMQSLQTIAEQCLPESWENENQSCQIGNQETANNFDLVDDLFKCQFCENIYKDAWSLDDHIKNQNCQDKYFCSNITNELTKSMLLEYTFDTNSKDNLMFENIEPKYQNLLCDVCDRTFTEQKYLKKHLKDIHFIDTACIHDEKKHSCTICFKRFRQYKVLLLHMRSHTGERPLKCDICLKTFALPSSLRIHKQVHAQEKQYGCHICPKKFKLKPTLNSHILTHSGERPHICQNCGKSFATFTNLKIHKRLHTGVKPFFCTFCSKSYNSSTQLKKHNRIHTGEKPYTCWICGEGFRRKETRDTHARYHTGERPYSCKICQKKYIAASHLRDHMRSHEDDKKFNCMMCQKKFQDMRSLKAHIATHTGQKSYLCRFCGNRFVFKSGLNTHLRTCHKDQNTQNKNSTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -