Sory008618.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitophilus oryzae
Gene Symbol
-
Assembly
GCA_002938485.2
Location
NW:1979453-1989092[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.31 16 5.9 0.8 1 20 599 618 599 623 0.87
2 11 7.3e-05 0.0038 17.3 3.4 2 23 658 679 657 679 0.98
3 11 0.00061 0.032 14.4 6.1 1 23 685 707 685 707 0.97
4 11 0.026 1.3 9.3 1.2 2 23 713 734 712 734 0.90
5 11 0.00044 0.023 14.9 1.4 1 23 757 780 757 780 0.97
6 11 6.6e-07 3.4e-05 23.7 0.7 1 23 785 808 785 808 0.98
7 11 0.0029 0.15 12.3 2.8 1 23 813 835 813 835 0.96
8 11 5.4e-06 0.00028 20.9 1.0 1 23 841 863 841 863 0.98
9 11 0.00014 0.0074 16.4 5.0 1 23 869 891 869 891 0.99
10 11 1.5e-07 7.8e-06 25.8 0.6 1 23 897 919 897 919 0.98
11 11 1.5e-05 0.00079 19.4 0.3 1 23 925 947 925 947 0.98

Sequence Information

Coding Sequence
atgcctttttcatgctctgttccaaattgtcgCGGGAATTATAGAGGaggtcccaaggtttctgcttttatattccccaaaaatgacgagcttcgtaaaaaatggttgacagctattaaaagagataatttcactcctactagcAGTTCTCGGGTATGTGAATTACATTTTCGCAATGAAGAAGTTGAAAGGAGTACAAAATTTTATGTTACAACGGGTGAAGCATTGGATGTACCTTTAAAGGTACCGAGGCTAAAAAAAGgTGCGATTCCGAGTAAACTACCAGGTTGCCCAGAATATTTGTCGAAACAAACCACATATCGAGAGGGTCCTGAATTAAAAAagcaaaaagaagaaaatgctTTGTTTCAAAAAGCTGTTGCTGAGAGTGTAGCTAGTGCTAGTACATATGACGCGGTACATTCATTATCAACTTTCAATGAATTATATTCAAGTAATGTATGCGAATTACGCTTTCGGCCCCACGAAATTGAAAGAGTAGCTTCTTATTATGTGGAAAGAACTGGCGAACTATTAACTGCTCCATTAAAGAATCCAAGAGTTGCTAAAGATGCAGTACCTTCTAAACTACCTGGTTGCTCCACGTAccgttttaaaaaacaaaagcccgATAGGTCTCGGAAGAAAGCGCCAGAGGAAAAAAAGGGACCTTTGTCTCTCAGAGTATGCCGAACCTGCTTAGCTCATAAGGACCTGTATTTAATTGACAATGTTAATCGGGAAGGTCTTGATCTTAAAGAAATAATCGAAAATTGGACCCCTCTTAAGttaaaaaagAATGAGAAACTCCCAAGAAAGATGTGTCAACGTTGTATTAATAATATGTACCAAACATACCAATTTTTACTTAAGTGTAAGAAGTCAGAAGAAACTttaaaacgatatttttatcAAGGCGTACAGAATGAACTTAACGAACAAGTTTTAATTGCAAAAAACTCTGAAATGGAGGTTTGTGAAAACAGTACATATAAGAAAAACAACAAGACGAAATCTGATAGTGAGAATGTAGATGATATTCAATCAGATATTCATTACACAGAGGATCTGTCTGATGTTCGTGAAAATAATACATACAAGAAAAACAAGGCAAAATCAGATAGTGAGAATGTAGGTGATATTTATTCAGATATTCATTACACAGATGATCTGTCTGATGTtggtgaaaacaatacatataaGAAAAATAACAAGGCGAAATCAGATAGTGAGAATGTAGGTGATATTTATTCAGATATTCATTACACAGATGATCTGTCTGATGTtggtgaaaacaatacatataaGAAAAATAACCAGGGGAAATCAGATAGCGAGAATGTAGGTGATATTCATTCAGATATTCATTACACAGAGGATCTGTCTGATGTTGAAGATTCTAAAGAATTGATTAATATTGTATTTGATGACCCAGAGAGTGAGAAAGGAGAAAATACTAATACTTTATCGAGGattacaaatattaaaatagaatttgatGAGAATGAAGTAATAGACAATGAAATTAAGACAACCAATGATGAACAAACAGTACACGATGATAATTTAACAGATCTTGTAAATaaggaattaaaaaatgatgtaGGTGATGACAGACACGAAAAAGATAACGCTGATGTTTTATTTGATATCGCAAATGATCAAACTGAAATTAAGCAGATCGAAGTAAAGAATAAATCTATGAAAAGACGAAGACTAAAGGCACAGCTAAttgataaaaaacatctatcaaaaagtaaaaatatatcataTGTTTTCCTAAAAGGTCCACCATACATATGCATCACATGTGATGCATCTTTCCAAAGCTACAAGGAACTACGAAAGCACAAAACTGAGACCAATCACAAGAAACTGTCAAAGTTTTTATGTCCATATTGTAATAAGAAACATGATAGTTACTCTACACACGTGGAACACGTTCGAACTCATACAGgagaaaaaccaaataaatgcTCTATATGTGGCAAACGCTTCAATTTACAGTGTGTCCTTAAAAGACATATGCTTACCCATATGGAAGTCAAGCCACATAGTTGTACATTTTGTAATAAACAATTTACACGCAGGCAATATTTAACGGACCATGAAAGAAAACATACGGGGGAAAAATTGATATGCTCATTTTGTGGCAAAGGATTTTCCTCGTATGGTTTATTACGCTGTCATGAAAAGGCTCATAAAGGGCCTCCGGGAAGCGATAACAAATCAAACAAAAGTACGGACCCAATGGCAAGAGATAAGTTATTTGAATGTCATGTTTGCGGAAAGGAATTACAATCACACCCAAGTTTAAAAGCGCATCTACGTCTTTTACATGgtccaagaaattttaaatgtgaaatatgtgGAAGAGCTTACGTTAGTAAAAAACATTTAGAAGATCATATACGAATATCTCATCAAGgcaTTAAACATTTCTGTAACGTATGTGACAAGGCATATACACGAGTAAATGACTTGAAGTTTCATATGAAATCACATCTTGGGCCAAATGTTTATCCCTGCGAACTATGTGAAAAaacatttacatataaaaactcTTTAGTTCAGCATCGGCGAATTCATACTGgcGATACAAAATATCAATGCAAAGAGTGTTTTCACATATGTGTGAATAAGCGTAATCTAGAGCAGCACATGCGTGTCCATACCGGAGATAAACAATTCGTCTGCAATTTTTGTGGAAAAATGTTTGCCCAACAGACTAACCTGTATGCTCATATGAAAATCCATACCGGGGAGAAAAACTACGCTTGTGAAATATGTGGTAAAACTTTTTATCGAGTCAGAGTATTGAACAAACACCTGGCAACTCATGCCAAGCATAAAGAACTTTAA
Protein Sequence
MPFSCSVPNCRGNYRGGPKVSAFIFPKNDELRKKWLTAIKRDNFTPTSSSRVCELHFRNEEVERSTKFYVTTGEALDVPLKVPRLKKGAIPSKLPGCPEYLSKQTTYREGPELKKQKEENALFQKAVAESVASASTYDAVHSLSTFNELYSSNVCELRFRPHEIERVASYYVERTGELLTAPLKNPRVAKDAVPSKLPGCSTYRFKKQKPDRSRKKAPEEKKGPLSLRVCRTCLAHKDLYLIDNVNREGLDLKEIIENWTPLKLKKNEKLPRKMCQRCINNMYQTYQFLLKCKKSEETLKRYFYQGVQNELNEQVLIAKNSEMEVCENSTYKKNNKTKSDSENVDDIQSDIHYTEDLSDVRENNTYKKNKAKSDSENVGDIYSDIHYTDDLSDVGENNTYKKNNKAKSDSENVGDIYSDIHYTDDLSDVGENNTYKKNNQGKSDSENVGDIHSDIHYTEDLSDVEDSKELINIVFDDPESEKGENTNTLSRITNIKIEFDENEVIDNEIKTTNDEQTVHDDNLTDLVNKELKNDVGDDRHEKDNADVLFDIANDQTEIKQIEVKNKSMKRRRLKAQLIDKKHLSKSKNISYVFLKGPPYICITCDASFQSYKELRKHKTETNHKKLSKFLCPYCNKKHDSYSTHVEHVRTHTGEKPNKCSICGKRFNLQCVLKRHMLTHMEVKPHSCTFCNKQFTRRQYLTDHERKHTGEKLICSFCGKGFSSYGLLRCHEKAHKGPPGSDNKSNKSTDPMARDKLFECHVCGKELQSHPSLKAHLRLLHGPRNFKCEICGRAYVSKKHLEDHIRISHQGIKHFCNVCDKAYTRVNDLKFHMKSHLGPNVYPCELCEKTFTYKNSLVQHRRIHTGDTKYQCKECFHICVNKRNLEQHMRVHTGDKQFVCNFCGKMFAQQTNLYAHMKIHTGEKNYACEICGKTFYRVRVLNKHLATHAKHKEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01351770;
90% Identity
iTF_01351770;
80% Identity
iTF_01351770;