Sory008585.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitophilus oryzae
Gene Symbol
-
Assembly
GCA_002938485.2
Location
NW:1739419-1761296[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.022 1.2 9.5 1.5 3 23 204 225 197 225 0.89
2 16 1.4e-05 0.00073 19.6 2.2 2 23 229 250 228 250 0.97
3 16 0.00063 0.033 14.4 2.5 1 23 255 277 255 277 0.98
4 16 0.003 0.16 12.2 0.2 1 23 283 305 283 305 0.98
5 16 0.0007 0.036 14.2 2.2 1 19 311 329 311 334 0.91
6 16 0.0086 0.45 10.8 0.1 1 23 340 362 340 362 0.98
7 16 0.14 7.3 7.0 4.4 1 23 368 391 368 391 0.96
8 16 0.0019 0.099 12.8 4.5 1 23 395 418 395 418 0.98
9 16 0.00013 0.0069 16.5 2.3 1 23 424 446 424 446 0.98
10 16 0.00017 0.009 16.1 0.3 3 23 718 739 716 739 0.91
11 16 1.4e-05 0.00071 19.6 5.2 1 23 745 767 745 767 0.98
12 16 0.0031 0.16 12.2 4.2 1 23 773 795 773 795 0.96
13 16 1.3e-05 0.00065 19.7 0.7 1 23 801 823 801 823 0.97
14 16 0.0034 0.18 12.0 2.7 1 23 828 850 828 850 0.95
15 16 0.063 3.3 8.1 7.2 1 23 863 885 863 885 0.98
16 16 4.8 2.5e+02 2.1 0.5 1 10 891 900 891 901 0.88

Sequence Information

Coding Sequence
ATGTTTCATAAACCCGTAATAACGCCTGACCTAACAAATTTCTGTCGAACTTGTCTTACACAATGCACAGCACAAGATTTAACAAAACTGTCCTGCGACATAAGTCTGAAAAATGATATTTACGAAATCACACGCATTCAGATGAGATTCCATTCGTCTCTACCACAGGGTatttgtaagaaatgttttagAGATATAAGAATCGCAATGGCTTTCAAAAAGAAAGTGGAACATACAGAGGTACAGTTGCAAACCGTGGTGAGAGTAGTGAACGAAACAAACAGTATTACAAGTATAGTTCTTTTAACAGAAGAACTACCTGTACCAGATTTAGTACCAATAAAAACCAGGGATGAAAAGATAGAAGCCAATAAAATTGATTCAAGTGAGAGTGATATAATAATTGAAAAGGTTGAAGAAACAGGGGAACAGGATTTAGTTCCAACAGAAACCAGAGATGAAATATTAGAAGCCAATACGAGTGATGTAAATGTAAAGatggagaatgaTATAAAATTTGAAGAAGTAGAAGTAAGATGGGAGGAGGTATGTGAGGAGGTTCCAAAAGAATGGcatataagtaaattaccatgtaaaaaattaagaaaatgtatttattgTGATAAAGAGTTTGACAACATTTTCGATCTGAAAatACACAAGAGGTTAGATCACGTTGATAAACCTTGCGAAATATgtggaaaaacttttaaatcAAGAGAATGCTATGTTATGCATCTAAGAACTCATTCGGAAAAAAGATATATGTGTGATCTGTGTGGTGAGACGTTTATGTATAGCTATAAGTTACACATTCATAAGAGACTTCATACTGGAGAGCAGCCTTTTAAATGTGACATTTGTGCCAATGTCTTCCAAAGTAATGCCTTGCTTAAAATCCACACAGCTAAACATAGGCCTGAATGTAAATTTAAGTGTAAAAAATGTCCAAAGGCCTTTAAATATGCCAGTGGTCTGTATTCCCATGATCAACGTTTTCACACTGTACAAACTAAGTATCAGTGTGAAGAGTGTGGAGTAAATGTGGATGGATATGGTGCATTTCAGAGGCATTCAAGGATGCATAGAGAAAGGACAACTCACATGTGCGAACTTTGTGGCAAATGTTACTTAGCTAGTATGTCGTTAAAGCGGCACAAAAAAAAAGTTCACTTACGGTCGTACCATTGCGAATGGTGTACCGAATCATTTAAGTATGAAATTAACCTTGACAAGCACTTAAAAACCTGCCATAAAAATGTGAAGCACTTTAAATGCGACGTGTGTAACAAAAGATTCAGGTTGCAAACCCTTTTAAAATTGCACAAGATAAGGCATAAAGAGGAGAATGGAGAAGGTATTGTTGGATTACCgattaagaGCCTCAATAATAACACACTGGCATATAAAGACCACTTAATAGAAGAATCTTTGGGTTACCCCTTATATAATCCTGATATTTGGTCATCGTTCTATTTTACGAGTTGGTCTTTCATGACTAGATTAAAaaTTTTGCACGACAAAGATGGATGTATACAGTTCCAGGGCAGTACATTTATCCATTTCATGAATATTACCAACAATGCATCAGGCCTTATAaTATTAACAATGTctgataaaattttgtatacctccgattttaaaaagttttgtagGACATGTTTGTTACCATTCGATGAACAACAAACTTTTTCAATGTACGACACCCTTGTTGCTAAACACTTGAGCAAAATAACACAAGTTCAATTTGTACATCATTCAGCATTGTCTACAGAATTGTGTTTGAAATGTTATCAGCACCTAAAAACAGCGATAGATTTCAGAGAGcgagtaaaaaaaattgaatctCAAATGCAACAAATTGTGATATTACTGAACGAAGCCAGTAAAAATCCTAATGTTGAAATTGTTGAGCCTGATAGTGATAATTCTGTAGAGAATAATGtagataataatatagaagAGgcTAATACACAAATGAGGGAAgatttacaatgtacaaatgaTAATGAATGTGTTACAGAATTTGAGGAAGATACATATAACGTTCAAAATGATGTAACTGTAAAAATTGAGAATGATATTGAAAGTAATCCTTCTAATCAAGAAGGTGATAAAGGTAAAGCGCCAACTCCAAGGAAAGCATTAGCATGTTCGTATTGTGGGAAAGAATTTAAAAGCCGAAGTAACGTTTTGTACCATGAAAAAGCCATTCACGCAAGGGAAAAGAAACACAAATGCACCATGTGCGATAAATCGTTTATGCGCAGGAAGTTTTTACAACGTCATATCAATATGCACACGAATACCAAGCCTTTTTCCTGTAAAATTTGTAAGAAAAGGTATTATTCCCAGCACGATTTGGATAATCACAAGATTCAGCATTCTGATGTGAAACAATATATGTGTGACATTTGCTCAAAGACATTCAAGACTGCTGGCAATTTCTATCAACATAGAGCAATACACGGCGAAAAAAAATATCAGTGCGAACACTGTGGGTACAAGGCGACATCTGTGACGCTTCTAAAACACCATCTTGTCAGCCATATGGATAAGAAAGTTAACATGTTTCTCTTCAAAGAACATAAATGTAATATTTGCGAGAAACATTATGGGCACAAATTTAGGTTAGACCAGCACATGCTGAGCCACACAAAAGAAAAACCTCACAGCTGCGACATTTGTGGAGAAAAGTACGGAATATTTCGCTtttag
Protein Sequence
MFHKPVITPDLTNFCRTCLTQCTAQDLTKLSCDISLKNDIYEITRIQMRFHSSLPQGICKKCFRDIRIAMAFKKKVEHTEVQLQTVVRVVNETNSITSIVLLTEELPVPDLVPIKTRDEKIEANKIDSSESDIIIEKVEETGEQDLVPTETRDEILEANTSDVNVKMENDIKFEEVEVRWEEVCEEVPKEWHISKLPCKKLRKCIYCDKEFDNIFDLKIHKRLDHVDKPCEICGKTFKSRECYVMHLRTHSEKRYMCDLCGETFMYSYKLHIHKRLHTGEQPFKCDICANVFQSNALLKIHTAKHRPECKFKCKKCPKAFKYASGLYSHDQRFHTVQTKYQCEECGVNVDGYGAFQRHSRMHRERTTHMCELCGKCYLASMSLKRHKKKVHLRSYHCEWCTESFKYEINLDKHLKTCHKNVKHFKCDVCNKRFRLQTLLKLHKIRHKEENGEGIVGLPIKSLNNNTLAYKDHLIEESLGYPLYNPDIWSSFYFTSWSFMTRLKILHDKDGCIQFQGSTFIHFMNITNNASGLIILTMSDKILYTSDFKKFCRTCLLPFDEQQTFSMYDTLVAKHLSKITQVQFVHHSALSTELCLKCYQHLKTAIDFRERVKKIESQMQQIVILLNEASKNPNVEIVEPDSDNSVENNVDNNIEEANTQMREDLQCTNDNECVTEFEEDTYNVQNDVTVKIENDIESNPSNQEGDKGKAPTPRKALACSYCGKEFKSRSNVLYHEKAIHAREKKHKCTMCDKSFMRRKFLQRHINMHTNTKPFSCKICKKRYYSQHDLDNHKIQHSDVKQYMCDICSKTFKTAGNFYQHRAIHGEKKYQCEHCGYKATSVTLLKHHLVSHMDKKVNMFLFKEHKCNICEKHYGHKFRLDQHMLSHTKEKPHSCDICGEKYGIFRF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-