Sory010194.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitophilus oryzae
Gene Symbol
-
Assembly
GCA_002938485.2
Location
NW:2239287-2242806[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.074 3.9 7.8 1.2 3 21 200 221 198 222 0.90
2 10 1.4e-07 7.3e-06 25.8 2.5 1 23 225 247 225 247 0.98
3 10 0.00075 0.039 14.1 0.4 1 22 253 274 253 276 0.90
4 10 8.6e-05 0.0045 17.1 1.8 3 23 284 305 283 305 0.93
5 10 1.7e-05 0.00087 19.3 1.8 1 23 331 353 331 353 0.98
6 10 0.0011 0.055 13.6 1.3 1 23 359 381 359 381 0.96
7 10 0.00032 0.017 15.3 1.1 1 23 387 409 387 409 0.96
8 10 9.7e-05 0.0051 16.9 5.9 2 23 416 438 415 438 0.94
9 10 4.1e-06 0.00021 21.2 4.1 1 23 444 466 444 466 0.99
10 10 3.2e-06 0.00016 21.6 0.7 1 23 472 494 472 494 0.95

Sequence Information

Coding Sequence
ATGAATGAAAAAACTGAAGATATATTGAAATTAGTTTCACAAAATGGTATGGACAAAATTTGCAGAACTTGTTTACAAGAAGTTCACAACGACTATTTCGATTTTGAGGGCTATTACAATGAgagaaaaattttggaaatttataTTAACGTAACTTCTGTTGAGGTTAACGTTGAGGATCTTTTACCTAAGAAAATATGCACTAATTGCTATAATGAAGTCGTTAAATTTGATATATTCAAAACTAGAGCTTTAGATTCAGAAAGGACGTTAGAAATTGTGTTGCTGAAGTTGAAAGAGGCTCAAATACAACAGTATCCATCCGAATCAAatgaagttttttataaacaagaaGACGAATGGCctactaataatttttttgataataatagTGAGGATGAATCCGCAGATGATCTTCCTCTTTCAACGAGACTGAAACTTGAACAAAATAATCAAAACACTATTCTTGAACATCAAAATAATGTAGAGTATTCTAGTAAACCTACACTACGTAAGAAACGgattaaacaattaaaacataacGATGACAATAGcaataatccaaaaaaaagaaaagtgcAGAGAAGAAAAGATATTTGTAAGCACTGTGGCAAATTAATACTAACTTACAAAATGTCCAGCCATTTGCGAACACATACCAAAGAGAAACCGTACAGTTGTGAGAAATGTGGTATTTGTTTTTCTGAGAAAAGCAATCTtaataggcatttaaaaattCACGGACAAGTTAAGCCACATACTTGTGAAATTTGTGGAAAAGGTTTTTTGAGACACTCAAGTCTTGCAATTCATCTGGTAGCTGCacataacaaagaaaaaaatgttttttgtccgacTTGTGGAAGGCCATTTAAGCATCAATTTTTCTTAAACAGACATATAGTAAATATGCAtagtaaaaaagaaaatgtaGAAAATGAAGTAAATGATCTGGTAACGAATGGACATAAAATTGAGGGTCAATCTCCATATCAATGTCCAATTTGTGGGAATTTTTACAGAACAAGGTCTAGTTTTAAAGTACATAAGTTAAGACATGAAGTACCTAAAGCATACCTCTGTAATATATGCGGTAACAGGTATTCAACTAAAGCTATATTAAAACACCATCAAATGGTACACACTggagaaaaaaattatagttgTGTTTTATGTGgaaaaaaatttagattttatCCTTCACTGAAAACACATAGCTTGattcaTACTGGAGAAAAGCCATTAAATTGCCATATATGTAACAAGCAGTTTAGGCAACATGCTCACTTAAACACACATATTAAGGGGCAACATACCGCAGACAGGCCCTTTAAATGTACTTTCTGTCCTAAAACGTTTAAACAAAGTTGCAATCTTGTGGTGCATACAAGGATACACACCGGTGAAACCCCTTATCTCTGTGATATTTGCGGTAGAGGATTTTACGATTCCAGTAGCttgaaaaaacacaaaaaggcCCATATTCTGGCAAAGTCGGAGATTTCCGACGACTGGCACAAACATGAAATGGAAATTAATGAAATGGGCGTGAAAGAAATTGAACTTACCAAACtacacaacttttaa
Protein Sequence
MNEKTEDILKLVSQNGMDKICRTCLQEVHNDYFDFEGYYNERKILEIYINVTSVEVNVEDLLPKKICTNCYNEVVKFDIFKTRALDSERTLEIVLLKLKEAQIQQYPSESNEVFYKQEDEWPTNNFFDNNSEDESADDLPLSTRLKLEQNNQNTILEHQNNVEYSSKPTLRKKRIKQLKHNDDNSNNPKKRKVQRRKDICKHCGKLILTYKMSSHLRTHTKEKPYSCEKCGICFSEKSNLNRHLKIHGQVKPHTCEICGKGFLRHSSLAIHLVAAHNKEKNVFCPTCGRPFKHQFFLNRHIVNMHSKKENVENEVNDLVTNGHKIEGQSPYQCPICGNFYRTRSSFKVHKLRHEVPKAYLCNICGNRYSTKAILKHHQMVHTGEKNYSCVLCGKKFRFYPSLKTHSLIHTGEKPLNCHICNKQFRQHAHLNTHIKGQHTADRPFKCTFCPKTFKQSCNLVVHTRIHTGETPYLCDICGRGFYDSSSLKKHKKAHILAKSEISDDWHKHEMEINEMGVKEIELTKLHNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-