Sory008590.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- Zbtb41
- Assembly
- GCA_002938485.2
- Location
- NW:1990757-1998135[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0071 0.37 11.0 0.1 2 23 224 246 223 246 0.94 2 11 0.00016 0.0086 16.2 0.8 2 23 265 286 264 286 0.92 3 11 0.0037 0.19 11.9 1.1 1 23 292 315 292 315 0.91 4 11 3.5e-07 1.8e-05 24.6 5.3 1 23 322 344 322 344 0.99 5 11 2.3e-06 0.00012 22.0 0.1 3 23 352 373 351 373 0.96 6 11 0.00013 0.0065 16.6 0.9 1 23 378 400 378 400 0.99 7 11 3.6e-05 0.0019 18.3 1.1 2 23 407 428 406 428 0.97 8 11 0.0014 0.074 13.2 0.9 3 23 434 455 432 455 0.94 9 11 0.024 1.2 9.4 2.0 1 23 461 484 461 484 0.93 10 11 4.9e-06 0.00026 21.0 1.8 1 23 488 510 488 510 0.98 11 11 0.018 0.91 9.8 2.1 1 21 516 536 516 537 0.94
Sequence Information
- Coding Sequence
- ATGTCTGAAGGGGCAAAAAGCTTTGAAAACTTATGCCGAACATGTTTGGCACAGGTGCCTCAAGATGCCTTAACGCAAATCTTCGGAAACGAAGTTctagaagaaaaaataattgaCCTTACCAATATGGCAttagggTTTCACTCCTTTCTCCCTACCAGTATATGCAAAACTTGTTTGAAATATCTGCTCATTGCGACacaatacaaacaacaaattcTGAGAGTCGAATTGCGCTTGCAGAACATTATAAAAATGACTGTTGATAATAATGATACGGATTTCGATTTTCCTTATATTACACCTGAGAATCCAATTGACGAAGAAAACTTGAACATTGACccTGAATCTTGCAATGTTAAAGTCGAACCTTCTGAGTCAGGAGATGAACATAATGTATTAGAGGCAGAGTTAGAAGAGGGTGAAGTTGTTGAGGAAAATAACACTGATGATAACTGTGATTCATCTGAACCTAAAGATCAACCTGATAATGACATAGCTAATATTACTgatgttttaattaaaactgaaaACATACCTAGTGTTGAGGAGGATCCGATTGCTGTAAATGTAAACAAGACTAAAAATTGGCCAGAACAAAAATTGGACAGATATGTGGAAGGAGTAAACGATCACGAGTATACTATCGTTGTGTTTAATCCTGAAGTTGAATGTGAGatttgtaaaataactctgaaagataaaaaaacttatattGCTCATGTCAAAGAGGTACATCCAAAAGAAAAGCCCGTCAAAGAGCCACGTTATAAGGATAAACCCGCACTAATTAGCTGCGATTTGTGcgataaaaagtttaaatataaCTATTCTTTGAAGCTTCATTCGGTAGTACATACTGGGGAAAAATTGTACAAATGTACATACTGCGatgaaaaattcAAATCTACGCCAATGCGAATTGAACACGAGAAAATTACTCATACCGGGGGGATCACACCTTACAAATGCGAAATCTGTCACAagtttttcaacaaaaaatacaacctGACGCTCCATATAAGGACTCATACTCGAGAGAATCCCGTCGCATGTCCGGATTGTCCAAAAagaTTTCGCAATCGGAGTGCTTTGAGTGCTCACGTGCAGGTTAACCATTCGGAAAAGAAGTACCAGTGTGAAATGTGCGGGTACAAAGCTAGTACCATGTACGTCCTGAAACGTCACATTAAGAGGCATGTTTTGGACAAGTCACTGCCATGTGACGTGTGCAACAAGATGTTCCAAACGGAAAAAGATCTTCGCTATCACAGGAGGAGGCACACGGAACGGTTTGGCTGTTCGATGTGCAACGTAAAATTCAGGACAAGGTTGTATTTGAAGAAGCACATTGAGGAATCCCACGAAGGACAGTCTCCGTTCGACTGTAGCATCTGCAAGCAAAGGTTTGAATCTGCAAAAGATTTGAGATTTCACAGATTCACTCAGCAcccaaaaaaattcaaatgcgATCTTTGCAATCGAAGTTTCCGTAATAAGGTCAGTCTGGTGAAACATAGCAAAGTACACGATGCAGACTTGCCGCatgaatgtaaaaaatgtgGATCTAAgTTTCAATATAAAATTGGACTAACAAAGCATAAAAAGGAAGGTTGCAATGGACGTGTTTCTGATGAATCTGATGACTCAGAACAGTAG
- Protein Sequence
- MSEGAKSFENLCRTCLAQVPQDALTQIFGNEVLEEKIIDLTNMALGFHSFLPTSICKTCLKYLLIATQYKQQILRVELRLQNIIKMTVDNNDTDFDFPYITPENPIDEENLNIDPESCNVKVEPSESGDEHNVLEAELEEGEVVEENNTDDNCDSSEPKDQPDNDIANITDVLIKTENIPSVEEDPIAVNVNKTKNWPEQKLDRYVEGVNDHEYTIVVFNPEVECEICKITLKDKKTYIAHVKEVHPKEKPVKEPRYKDKPALISCDLCDKKFKYNYSLKLHSVVHTGEKLYKCTYCDEKFKSTPMRIEHEKITHTGGITPYKCEICHKFFNKKYNLTLHIRTHTRENPVACPDCPKRFRNRSALSAHVQVNHSEKKYQCEMCGYKASTMYVLKRHIKRHVLDKSLPCDVCNKMFQTEKDLRYHRRRHTERFGCSMCNVKFRTRLYLKKHIEESHEGQSPFDCSICKQRFESAKDLRFHRFTQHPKKFKCDLCNRSFRNKVSLVKHSKVHDADLPHECKKCGSKFQYKIGLTKHKKEGCNGRVSDESDDSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -