Sory001210.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:1823754-1838361[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00012 0.0061 16.7 0.3 2 23 161 182 160 182 0.96 2 11 0.17 9 6.7 0.8 3 23 189 210 187 210 0.96 3 11 0.054 2.8 8.3 1.1 1 23 218 241 218 241 0.90 4 11 1.4e-05 0.00074 19.5 2.1 2 23 274 295 273 295 0.95 5 11 0.04 2.1 8.7 0.1 3 23 300 319 299 319 0.96 6 11 0.013 0.66 10.2 1.7 2 23 325 347 325 347 0.93 7 11 9.3e-06 0.00048 20.1 0.9 2 23 353 375 352 375 0.96 8 11 3e-06 0.00016 21.7 2.2 1 23 381 404 381 404 0.97 9 11 0.00075 0.039 14.1 3.5 1 23 410 432 410 432 0.96 10 11 1.8e-06 9.2e-05 22.4 0.2 1 23 438 461 438 461 0.97 11 11 4.4e-07 2.3e-05 24.3 0.1 2 23 470 492 469 492 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAACATCAATATTGTCGTTTATGTTTATCTCGGTCAGCCATTTACCATTCTCTGCTGAAGCATAATGGGAAAGAAATGCTTTTTGCCCTTACGGGAATCGAGATTAACAGCGAAATTTCGTCTACCGACTCCTGTGCAAAGTGTTGGCTAGATTTAAAACTCGCTTATCACATTCAACAAACCTTTGTTGAGGCAGATAAAAGATTCCAAGACTTAGGCATGCAGTGTCCACCAAAAATCGAACCTGTGTCGCCACTGCATGAACCTGCATCATTACTACACCAACCTCCATCACCACAACATGAACCTAGTGACAATATTGAAAGTATTGAGAGTTTTACCAGCTTATTTCAGGTTCAGGAAAATCCTTCAATAAAAAATGAAgtgaatgatgatgatgatgatgatcttAGAAGATATCCTgaagtaatttttattcaagCTGATGAAGTTGATACTATTGAAAATTCAACTGTATGTCCTCTTTGTGGCTTGACCTTTCAAAACAACGATACATTTTATAATCATATAAGCAGTCATTACAACGAACCTCAGCATTGCACTGACTGTTCTTTACCTTTACCAAGCATATCCGCATATTGGCACCACATAGAAACAAAACATCCGAAGGAAATGAAAAAACCATATTATTGTGGAAAATGCAAACTTTCTTTCCGTTACAGGCCTTTTTTTGATATGCATCTGTTGGCGCTTCATCCAGCCCCAATCCGGCGATCGCCAAAACcccgaataaaaaaaaaccataaaaaattaattgatgATATTGATGATGAACTACTAAATGAAAATTTAAGTTGCAATCAATGTAATAAAGTTTTCTATACTAAAAGTACTTTCAGGAATCACGTTAAAGGTCATATGAGAAGAGCTTGTCCTATATGTGGAGCCAAAATAACAATttacaaTTTAACTAAGCATGTAAAACTACATAAGTCTGGACCGGCAGTATGTCATCTCTGTGGAATAACTGCCAAGAATCATGAAAGCTTAAGGGGTCATATGTATTACACCCATTCTCAAAAACGGCTCACTTGCGAAGAGTGCGGaagagtatttaaaaaattatacagttaTAAAATGCACATTAAAAAGGAACATACAGGTGAGAGAACTTTTACATGCGATTCTTgtggaaaaagattttttaccaACTACGAGTTAAATAATCATATTAAATCGAGACATCTTAAACAAAGGCCTCATATTTGCCAATATTGTCAAAAGGGATTTTCAAGTCGGTTTGCAATGAAGACTCATGAAAGGCAACATACAAATGAAGCGCCATATGTGTGTGAAGTGTGCGGTGAAGGTTTTAGACAAAATGTCTCTTTAAAGGCCCATAGAAAGTCGAGACACAATATTATTGAAAACAAAACCATTGAATGTCCGACATGCGGAAAAATGTTCGTTAACAACTGGGCATTAAAGAGTCATATCAGATCAGTACATGATTAA
- Protein Sequence
- MEEHQYCRLCLSRSAIYHSLLKHNGKEMLFALTGIEINSEISSTDSCAKCWLDLKLAYHIQQTFVEADKRFQDLGMQCPPKIEPVSPLHEPASLLHQPPSPQHEPSDNIESIESFTSLFQVQENPSIKNEVNDDDDDDLRRYPEVIFIQADEVDTIENSTVCPLCGLTFQNNDTFYNHISSHYNEPQHCTDCSLPLPSISAYWHHIETKHPKEMKKPYYCGKCKLSFRYRPFFDMHLLALHPAPIRRSPKPRIKKNHKKLIDDIDDELLNENLSCNQCNKVFYTKSTFRNHVKGHMRRACPICGAKITIYNLTKHVKLHKSGPAVCHLCGITAKNHESLRGHMYYTHSQKRLTCEECGRVFKKLYSYKMHIKKEHTGERTFTCDSCGKRFFTNYELNNHIKSRHLKQRPHICQYCQKGFSSRFAMKTHERQHTNEAPYVCEVCGEGFRQNVSLKAHRKSRHNIIENKTIECPTCGKMFVNNWALKSHIRSVHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -