Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:4724192-4741477[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.015 0.78 10.0 0.3 1 19 224 242 224 244 0.95

2 10 0.0029 0.15 12.3 1.4 1 23 257 279 257 279 0.98

3 10 3.8e-05 0.002 18.2 1.0 2 23 334 356 333 356 0.92

4 10 1.8 92 3.5 0.1 1 19 419 437 419 440 0.78

5 10 1.6e-05 0.00084 19.4 2.2 2 23 468 489 467 489 0.96

6 10 2e-05 0.001 19.1 1.2 1 23 495 517 495 517 0.98

7 10 1.7e-06 8.8e-05 22.4 1.2 1 23 523 546 523 546 0.96

8 10 7.3e-08 3.8e-06 26.7 0.6 1 23 552 574 552 574 0.99

9 10 2e-07 1e-05 25.4 2.1 1 23 580 602 580 602 0.99

10 10 7.6e-05 0.004 17.2 3.0 1 23 608 630 608 630 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.015	0.78	10.0	0.3	1	19	224	242	224	244	0.95
2	10	0.0029	0.15	12.3	1.4	1	23	257	279	257	279	0.98
3	10	3.8e-05	0.002	18.2	1.0	2	23	334	356	333	356	0.92
4	10	1.8	92	3.5	0.1	1	19	419	437	419	440	0.78
5	10	1.6e-05	0.00084	19.4	2.2	2	23	468	489	467	489	0.96
6	10	2e-05	0.001	19.1	1.2	1	23	495	517	495	517	0.98
7	10	1.7e-06	8.8e-05	22.4	1.2	1	23	523	546	523	546	0.96
8	10	7.3e-08	3.8e-06	26.7	0.6	1	23	552	574	552	574	0.99
9	10	2e-07	1e-05	25.4	2.1	1	23	580	602	580	602	0.99
10	10	7.6e-05	0.004	17.2	3.0	1	23	608	630	608	630	0.97

Sequence Information

Coding Sequence: atggAAGGTGCAGAATCTAGAGAATTACTTGGAAATGTTGTAATAACTACCAGCGAAGGGGCCGACGGCCACCAATATATTCGTCTCCCAGAAAACTCACAGATCATAAGCTCGGACTTGTTGCAAAACTCAAATGGCCTTGTTGTTGATTTAGGTGGTAGCGATTTCATCCCAGTCACTTACAGCTCCGACGATATACTTTCACAAGAACTAACAGAAGAGGATAGAAACTTAGCTGCTGCCTTAGTTGCCGTTCAGCTGAGTCAGCAACAAAAGCAACAGCAACTTCAGGATGCTACTTTACCACCTTTAATAGGCAATAAAATGCTGGAAGAACATCAACAGCTAATTCTCACCCAAGATAAATCTGGAAAtggacaatatttaaaaattgtaaatacagACAATTTATACATTGACCAGCAGGGTGTACATAAAATTGTAGAAAATGTTAGAATTATTGATGAATCAGACCATATTCAACATGTTGTCGAGGATTCAGCGCATGAGAATAAGATAgaaattattgaaaaatcacTTGAAGATGAAAAAATTGAATCCGATGGGGAATCATTGAGGAATGACCACCGGTCATCAAAGAAGTCCCTGCCTCATAAGAAACGTATCAGTAGAAAATTACGCAAGAACAGTGCtgttaatttgaaaaaatatgccTGTTCCTTTTGCACTCAGACTTTTACAGATACTGATGAATACCAAGAACACGAAGGCAGTTGTCAAGCTGCAAAATTACCAGAAGTATCTCCGTTTTCTTGTCAACTGTGCAATACACCATTTGCAGACCAATTGAAattctttgaacatttaaagaaacatTACGAGCCTGGTGGTCTGGGTATGACAGTGGAACCGCCTGCACCAACCCCGGTGGTAGAGGAGAAGAAAAAGAAATCTTCTCCGGCTCCAAAGCAAGAGAAGAAGCATGTGGTTGAGGAGAAGGAGCCACAAGAAACACTGTTAACTAGCTTGCTCAGTTTGCAGTGCATTGAATGTAATAAAACGTTTAGGAGGCAGAAAACATTTGAGGCTCACATGAGGGATGTTCACACTAACAAACCAGATTTGGAAGATGAATTTTCGGATACAGAGGATATGATGGCAGGTATCAATGTTATGGTCGATAATGATAGCACTATGGGCGACAATAATGAGGACGACAGTAAAGCATGGTATCAAGAGGAAGAACTACATCAGACAGAAAAAGACCTAGAAGAACTGGAAAATAAAGACGACCATATTTGTCACCTTTGCAAGCAACCTTTTGCCCTAAGAGCAATCCTTCTACAACATTTAGTAACGTGTAGACTGGCCACAGGAAATTCAGATCCAACGCCTGCTGTAATTGTgagaaagaaaaacaaaaaagtgaAGGAGAAGCTAAATTGTGAGTTGTGTGACAGAGTGTTTAAACATAGGAACTCTTTGGTTTACCATATGAGGAGTCACAGCGGTATCAGGCCACATCAGTGCGACTCTTGTGGTAAAAGCTTCTTTGCTTCAAGTGCACTcaaagttcATTTAAGGCTGCATTCCGGCGATAAGCCTTACGATTGCGAACACTGCGGACGCAAATTCAGACAGTGGGGCGATTTGAAATATCACATAACCTCAATCCATTCGACGGAGAAGAACTACCAATGCGAATATTGCGGCAAGGAATTTGCCAGGAAATATTCGTTAGTGGTTCATAGAAGAATACATACAGGCGAACGTAACTACAAATGCGAGTACTGCGGTAAGACATTTAGAGCCTCCTCCTATTTGCAAAATCACAGGAAGATCCATACGGGAGAAAAACCTCATAATTGTTCCATATGTTCGAAACCATTCAGGGTGCGATCCGATATGAAACGACACGAGAAAACTCACGGAAAGATGGGATCTACCAgAGGAACGGCTGCCAAAGTTCAGTCGCAAACTCAGACGATTAAAGTGCAAAAAGATGAAGTGGAAGAAAACGATGAATCCAACGAACTTCACATTGGTGAAGAGGAAGATGGGGCCGAACATATTTTAGGAGGTTTTGAACACCAAGAAATCGAAATGATGAGCACGACAGGCATTACCAAGAGAAATTTGTATACCAACGGACACGAACTATTTTTGGTGACGTACCCTAACGAAATACTACCAAGAGGCTCCGGTAACACGGAAACGTGGATTCACACCAGCCATCCATAA
Protein Sequence: MEGAESRELLGNVVITTSEGADGHQYIRLPENSQIISSDLLQNSNGLVVDLGGSDFIPVTYSSDDILSQELTEEDRNLAAALVAVQLSQQQKQQQLQDATLPPLIGNKMLEEHQQLILTQDKSGNGQYLKIVNTDNLYIDQQGVHKIVENVRIIDESDHIQHVVEDSAHENKIEIIEKSLEDEKIESDGESLRNDHRSSKKSLPHKKRISRKLRKNSAVNLKKYACSFCTQTFTDTDEYQEHEGSCQAAKLPEVSPFSCQLCNTPFADQLKFFEHLKKHYEPGGLGMTVEPPAPTPVVEEKKKKSSPAPKQEKKHVVEEKEPQETLLTSLLSLQCIECNKTFRRQKTFEAHMRDVHTNKPDLEDEFSDTEDMMAGINVMVDNDSTMGDNNEDDSKAWYQEEELHQTEKDLEELENKDDHICHLCKQPFALRAILLQHLVTCRLATGNSDPTPAVIVRKKNKKVKEKLNCELCDRVFKHRNSLVYHMRSHSGIRPHQCDSCGKSFFASSALKVHLRLHSGDKPYDCEHCGRKFRQWGDLKYHITSIHSTEKNYQCEYCGKEFARKYSLVVHRRIHTGERNYKCEYCGKTFRASSYLQNHRKIHTGEKPHNCSICSKPFRVRSDMKRHEKTHGKMGSTRGTAAKVQSQTQTIKVQKDEVEENDESNELHIGEEEDGAEHILGGFEHQEIEMMSTTGITKRNLYTNGHELFLVTYPNEILPRGSGNTETWIHTSHP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01244462;
90% Identity: -
80% Identity: -