Sory002359.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:10520029-10525465[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.7e-05 0.0024 17.9 1.5 1 23 93 116 93 116 0.96 2 10 0.037 1.9 8.8 1.1 2 23 219 241 218 241 0.97 3 10 0.00025 0.013 15.6 2.6 1 23 247 269 247 269 0.98 4 10 4.9e-05 0.0026 17.8 0.3 1 23 275 297 275 297 0.96 5 10 1.8e-06 9.4e-05 22.4 3.2 1 23 303 326 303 326 0.94 6 10 1.6e-07 8.2e-06 25.7 0.9 1 23 334 356 334 356 0.98 7 10 0.0006 0.031 14.4 1.2 1 23 362 384 362 384 0.97 8 10 4.5e-05 0.0023 18.0 3.9 1 23 390 413 390 413 0.96 9 10 4e-06 0.00021 21.3 1.0 3 23 429 449 427 449 0.96 10 10 9e-05 0.0047 17.0 1.1 2 23 456 478 455 478 0.97
Sequence Information
- Coding Sequence
- ATGCCTGAGAGTTTTCAAGTGTGTTGTGTTTGTCTTAATAAGTGCCAATCCGTTCAGAATATCAATGAAAACCTCCACGGAGATGCGAAATATATTGAGAAGTTACAAGTGTGCGTGCCAAATgagATTTGGCACGACGATTTTAATATCTGTAATGGTTGCGTGGATAAGCTAAATACAGCGTACACTTTTATTCAGCTATGTGTAAAGAGTGAGAAGTATCGTAAGGGACAGCTACAAGTAATTAAACAATCTAAAGAACCAACTCCCACAAGGTTTATTTGTCAAGAATGCAATAAGTCGTTTAGattaaaaagAACTTTAAGTTCGCATATAACAAGAATTCATAGAAAGCATCGATATAATCTTAAAAAGGAATCAGAAATATGTGATCCTGTAGTAATTGATCCTGTAAAGAGAGAgtcttttttaaatgaaattgacAAAGATGGTAAAAAAGACATTGTTAACGAGCATCAGTATAGTGACAATATAAAATTTGATGTAGAAAATGATATTAAAGAGGACTTTAATGACTGTAACAATTCAGATTTAGAAAATAGGAATAGTAGTTACTCAAGTGATGAAGaactaaaaaagaaaaagaagataTATAAAGGGAAAAAAAGGGGACCAAAATATAAAGGGCCCAAAAAATGTGACTTTTGTGAACTTTTATTTGCTCGATCAGACAGATATGTCCAACATTTACGTTCCAAGCATACATTCGAAAAGCCTTTTCAATGTGATTTGTGCGATTCAAAatattttagcAGTTATAATCTCAATGTTCATAAAAGAAAGCACACTAACGAAAAACCGTTTGTATGTGCTGCTTGTGGAAAAAAGTTTAGATCGTCTACTGATTTGTGGCAACATAATAAGATTCACGATAGAGTTAGACAATATCCATGTACAGAATGCGATAGAAGTTTTAAAACACATAGTAATTTAAGAACACATAAATTACAGATGCATCAAGATCCACTTTTGTGGAAACACGTATGCCCAGTATGCGGAAAGAAATTTCCGCTTAATAATAATCTGGTGAAGCACATGCGCAGACACGAGGGCATTAAACCTTTCGCATGTCATTTGTGCGAGAAAAGATTCGTCGAGAAAATCGACATGCAAACCCATTTGTTAAGTCATTCCGATGAACGATTATTCCAGTGTCACCTTTGTACGAAAGAATACAAAAAGAAGGAAACGTTACGTAGACATTTGAAAGCGGAGCATGATACAGGAAACTATAGAATTAAGCAGCCGGAGAAGAAGATCTGTTGTCCGATGTGTCCTAAAGTGTTTGCctttaataataaattgcaAAGACATATCCTAACACATACCGGTGAAAAGCCGGTTAAATGTGAGTTTTGTGAGAAGAGATTCAGGGATAATTATGATAGGAACGTGCATTTGAGGAAAGGCCATAATATGGAACCACagttttaa
- Protein Sequence
- MPESFQVCCVCLNKCQSVQNINENLHGDAKYIEKLQVCVPNEIWHDDFNICNGCVDKLNTAYTFIQLCVKSEKYRKGQLQVIKQSKEPTPTRFICQECNKSFRLKRTLSSHITRIHRKHRYNLKKESEICDPVVIDPVKRESFLNEIDKDGKKDIVNEHQYSDNIKFDVENDIKEDFNDCNNSDLENRNSSYSSDEELKKKKKIYKGKKRGPKYKGPKKCDFCELLFARSDRYVQHLRSKHTFEKPFQCDLCDSKYFSSYNLNVHKRKHTNEKPFVCAACGKKFRSSTDLWQHNKIHDRVRQYPCTECDRSFKTHSNLRTHKLQMHQDPLLWKHVCPVCGKKFPLNNNLVKHMRRHEGIKPFACHLCEKRFVEKIDMQTHLLSHSDERLFQCHLCTKEYKKKETLRRHLKAEHDTGNYRIKQPEKKICCPMCPKVFAFNNKLQRHILTHTGEKPVKCEFCEKRFRDNYDRNVHLRKGHNMEPQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -