Sory012708.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:1192289-1201512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.056 2.9 8.2 2.8 1 23 292 314 292 314 0.97 2 12 0.001 0.052 13.7 2.6 1 23 392 415 392 415 0.96 3 12 3.8e-06 0.0002 21.3 0.8 1 23 421 443 421 443 0.98 4 12 0.0061 0.32 11.2 0.7 2 23 453 475 452 475 0.93 5 12 6.4e-06 0.00033 20.6 4.2 1 23 480 502 480 502 0.97 6 12 3.8e-05 0.002 18.2 0.7 1 23 508 530 508 530 0.96 7 12 5.5e-06 0.00029 20.8 0.3 1 23 536 558 536 558 0.97 8 12 2.7e-07 1.4e-05 24.9 2.0 1 23 564 586 564 586 0.98 9 12 1e-05 0.00053 20.0 4.6 1 23 592 614 592 614 0.97 10 12 0.0071 0.37 11.0 5.5 1 23 620 642 620 642 0.96 11 12 0.36 19 5.7 2.5 1 23 648 670 648 670 0.92 12 12 5.1e-07 2.6e-05 24.1 0.7 1 23 676 698 676 698 0.99
Sequence Information
- Coding Sequence
- ATGGAGGTTGaaaagttattgtttaattCTACATATTGTAGATTATGTTGCACAGAAAATGAAAACGGAATCAACTTATTTTCAGGCGATGATAATTCCGAAGAAGTGTGTAATTTGATAAACAGATATTTACCTCTAaagGTAACCCAAGAAGATCCTCTACCTAAAACAATATGTCCTGGGTGCCACATACAATTAGAAACAACTAAACTATTTATGGATTTAATTATTGAAGGTCAAGATAAATTCAGGATTTTATTAAAAGCCGAACAAGATTTACTCGAGAgggaagaaaaggaaaaaaaggaACTCGAAAAAGCATTACACCATCACAATCCCAATGCTAGCGTTGAAACATATACCATACAAACCGATGAAAATGgggaaaaatttattatacaaaTTTATAGCAAAGGACCGTTATTTTCTCCAGAACATGAACTAGTTCTAAAAGCCGACGGGCTGggtaaaccaaaaaaaaaacggggAAGACCTCCAAAACCATCAAAACAAGAAAATAGTCATGAAGCTGAGAAGATTGCAAACTCAGTAATTGAGACCAATTCTAAAGATGATACTCACGAAACAGTTGTTAgaaatgatagaaaaaaaagaaaaataagagcTCCAGCCAGATATGACGGTGTTGTGCAGGGTGCAGAGCTTGATCACTTTTTAAAAAAGGAAGGTGTTTTGGATGAGGTTGAAGAGGTAGCTTTTACTGGATtagaaaaaacatttacagaCTCGAAAGTACAACCTTTAGAAATAGGAAAAATACTAAGCTCAGAGGGACAAGATTTAGGacagtcagtattttcaaatagaAAATCAAGTAAAAAGAGGATGAAAAGGAAACTGAACAGAATGAAGTATACTTGTGATATTTGTTCAAGAAAGTTCCTACATTTGGATCAATATGAATTACATAGAAAAGATCATAAGGTAATGTATGCATGCCAAGAAGAAAATTGCCAAATGAGAAgtgaaaataaagatattattttgaatCATCAAAAAGAAACTAACCATCATGGTATTGCTTTATCTCAGGAAGACAGTTGTaatggcGATGTAATATTagatgaaaaaaacaaattaaacaaTATTGAAGTGACTTCTAACTTATTAACCACAGAAGAAGAACAGAAAAATACAACTGatgagaaaaaatttaaatgtccTAAATGTGATAAGAATTTTTCCTGCAAGCAAAGTTATGAGGTTCATATAAAGGCAATTCATGATGGTGAAAAGCCATTTAAATGTGATATTTGTGAAAGGACTTTTGCATATGCTTATAGTTTAAAATATCATATGATTTCCCATAAAAACAAAGATAATCTGGATCAGATTTCTTGTGACCAATGTGATAAAGTTTTCAATCATGTCAGCAGTGTCGTTTACCATAAAGATACAGAGCACGGCAACCCgaagTTTATTTGTAATACATGTAATAAGACGTTTAAGCATAGACAGTTGCTCCAAAGGCATCAGCTGGTACATACAGATGAAAGACCGCATAAATGTAGTGCTTGCCCTCAAGCTTTTAAAACGAAAAGTAATCTGATAAACCACGAAATTATTCATTCACGGCACAAAAGATTTATCTGTCCAATATGTGGGCAGGGCTTTGGACATAAGACGTCGCTGACTATTCATCTAAGATGGCATGAAGGTACAAAACCTTACGAGTGTGATATCTGCCATAAAACATTTTCGCAAAAGGGAAACTTACTAGAACACAAAAGAATTCACACCGGTGAAAAACCGTTTTGTTGTGATTTATGCGGCAAGAGTTTTACAACCTCATCCCAGTGGAAATTACATCGCAAAAGACATACAGGAGAAAAGCCATTTCTTTGTCAATATTGTCAAAAACGTTTTCTACACAAGGATACTTATAATACGCACATTAGAAGACATTTAAATATTCGTCCTTATAAATGTAAGTTTTGTTCAAGAGCTTTTGCAGAGAACTGGGCTTGTTCTCGACATGAGAAACTTCATTTGGGAGAGAAACGTTATAAATGTGAAACCTGTGGCAAagcatTTGCTGATGTATCTAACTTTAGTAAGCACCGAAGAATACATACTAATAAtttggaaaatattaatttaattaatacagTTACCAATATGGAAATAGCCAAAGAAAATTGCACAACATCTGGCTCAATGGAAGTAGAAAATCTACCTGTTATAAATTCTAATGAAAATACTTTGGTAAACAAAACACAGATTGAaGAAATTGTAACGTCAAATTTGCAAATCCAAGAAGTGCTAGATAATGAAGGAAACCCTATCAATTTTACAACGGCAGATGGCCAGCTAATTCCCATAGTATCGTCCGACTCTAAAAACCTACAAGGATTGATGCCCGATGGGACTTTGGTTAGTCTAGATATTTTACCAAATCAGATCAAAGATATTGAACCCCAACCGattcagAGTGAAGAAATAAATCTTCTTAATACCGAAATTCAGTTCCTAGAAAATAACTTAGTTACCAGTCAAGATGATGCTTTATCTCAAGAAAAAACGACTTTTATATCTGAAGATGGAAACGTTTGTTTTATTACATCATTTGATGAAAATGCTTTTTTAGCAATAAGTTAA
- Protein Sequence
- MEVEKLLFNSTYCRLCCTENENGINLFSGDDNSEEVCNLINRYLPLKVTQEDPLPKTICPGCHIQLETTKLFMDLIIEGQDKFRILLKAEQDLLEREEKEKKELEKALHHHNPNASVETYTIQTDENGEKFIIQIYSKGPLFSPEHELVLKADGLGKPKKKRGRPPKPSKQENSHEAEKIANSVIETNSKDDTHETVVRNDRKKRKIRAPARYDGVVQGAELDHFLKKEGVLDEVEEVAFTGLEKTFTDSKVQPLEIGKILSSEGQDLGQSVFSNRKSSKKRMKRKLNRMKYTCDICSRKFLHLDQYELHRKDHKVMYACQEENCQMRSENKDIILNHQKETNHHGIALSQEDSCNGDVILDEKNKLNNIEVTSNLLTTEEEQKNTTDEKKFKCPKCDKNFSCKQSYEVHIKAIHDGEKPFKCDICERTFAYAYSLKYHMISHKNKDNLDQISCDQCDKVFNHVSSVVYHKDTEHGNPKFICNTCNKTFKHRQLLQRHQLVHTDERPHKCSACPQAFKTKSNLINHEIIHSRHKRFICPICGQGFGHKTSLTIHLRWHEGTKPYECDICHKTFSQKGNLLEHKRIHTGEKPFCCDLCGKSFTTSSQWKLHRKRHTGEKPFLCQYCQKRFLHKDTYNTHIRRHLNIRPYKCKFCSRAFAENWACSRHEKLHLGEKRYKCETCGKAFADVSNFSKHRRIHTNNLENINLINTVTNMEIAKENCTTSGSMEVENLPVINSNENTLVNKTQIEEIVTSNLQIQEVLDNEGNPINFTTADGQLIPIVSSDSKNLQGLMPDGTLVSLDILPNQIKDIEPQPIQSEEINLLNTEIQFLENNLVTSQDDALSQEKTTFISEDGNVCFITSFDENAFLAIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -