Basic Information

Insect: Sitophilus oryzae
Gene Symbol: Hivep1
Assembly: GCA_002938485.2
Location: NW:1974721-1978688[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.1 5.4 7.4 0.5 1 20 266 285 266 290 0.90

2 11 1.7e-06 9.1e-05 22.4 4.6 2 23 325 346 324 346 0.98

3 11 5.8e-05 0.003 17.6 4.3 1 23 352 374 352 374 0.98

4 11 0.0025 0.13 12.5 1.3 2 23 382 403 381 403 0.96

5 11 0.0079 0.41 10.9 0.8 1 23 417 439 417 439 0.97

6 11 2.8e-05 0.0014 18.6 1.4 1 23 444 467 444 467 0.95

7 11 9.3e-06 0.00049 20.1 1.9 1 23 472 494 472 494 0.97

8 11 4.2e-07 2.2e-05 24.4 1.2 1 23 500 522 500 522 0.98

9 11 5.7e-06 0.0003 20.8 1.8 1 23 528 550 528 550 0.99

10 11 1.6e-07 8.1e-06 25.7 0.7 1 23 556 578 556 578 0.98

11 11 1.8e-05 0.00092 19.2 0.4 1 23 584 606 584 606 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.1	5.4	7.4	0.5	1	20	266	285	266	290	0.90
2	11	1.7e-06	9.1e-05	22.4	4.6	2	23	325	346	324	346	0.98
3	11	5.8e-05	0.003	17.6	4.3	1	23	352	374	352	374	0.98
4	11	0.0025	0.13	12.5	1.3	2	23	382	403	381	403	0.96
5	11	0.0079	0.41	10.9	0.8	1	23	417	439	417	439	0.97
6	11	2.8e-05	0.0014	18.6	1.4	1	23	444	467	444	467	0.95
7	11	9.3e-06	0.00049	20.1	1.9	1	23	472	494	472	494	0.97
8	11	4.2e-07	2.2e-05	24.4	1.2	1	23	500	522	500	522	0.98
9	11	5.7e-06	0.0003	20.8	1.8	1	23	528	550	528	550	0.99
10	11	1.6e-07	8.1e-06	25.7	0.7	1	23	556	578	556	578	0.98
11	11	1.8e-05	0.00092	19.2	0.4	1	23	584	606	584	606	0.97

Sequence Information

Coding Sequence: ATGTTACCATTAAATTCATATCCGAAGATATGCCGAACGTGCTTAGCTCAAGACGAGCTTTATTTAATTGACGAAGTAAATTGGGAAGGTCTTAATCTTAAAGAAGTCATACAAAATTGGACCCCGCTTGAGttaaaagAAAATGATAAATTACCAAGAATGATGTGCAAATGTTGTATTAAAGATATGTACCAAacatatcattttttatttaagtgtaAGAAGTCAGAAAAAACTTTACAAGGTATTATTGATCAAGAAATAGTAGACAAACATGTGTTAAAAACAAAAGTATCTGAAATAGAGGTTTATGTAAATAagagatatgaaaaaaataacttgTTGAAATCAGGTACTGAGAATAAAGATGATAATCATTCCGATATTGAATGCACACACAATCGACCTAGGCTTCGTTCTAAAGAATTAAAGAATGATATGAGTAAAGACAGGgagaaaaatgaaaatactaTTAAGTTATTGAAGATTacaaatattaaaacagaaattAAGCAGCATGATACAAAAAGTAAAGTGAATATAAAAAACTACCAAGAGACAGTAAACAGTGATAATTTAACTGATCTTGATGATACCAGAGAGTTAAAAAACGATGACAGTGATACAGAAGAAAAAACTAATGCTCTACCTGATATTTCAAAGGTTAACTTAGAAATGAAACAGACTGAAATAAAGAACAAAGTTATGTTGAGGAAAAGAGTTAAAGCACAATTAATCGATAAAAGCGATttaccaaaaagaaaaaaaagaaacatttttcgaAAAGGTCCCCCATACACATGTATTACATGTGAcactatttttgaaaattacgaggaattaagtaaacataaaattgaGACAAAGCATAAAAAATCTTATAAGTTTATATGTCCATATTGTCAAAGAAAGCATGACGCATATTGTAGATATGTAGAGCATATTAGGACGCATACAGgagaaaaaccaaataaatgcTCTACATGTGGCAAGTGTTTTAATTTTCAGACTGATTTAAAGAGACACATGATTACCCATATGGAAATAAAACCATATAATTGTAGATTTTGTAATAAAGGGTTTACAAGAAAGCAGTATTTAACGAATCACGAGAGGAAACATACTGGTGAAAAATTAACTTTAGTATGCTTATTTTGTGGAAAAGTTTTTCATTCGTACTGGACATTGTTGTATCATGAAAAGACACATAAACAATGTGCTAAAGACCGAAAATCCAAAGACAAATCATTTCAATGTCATCTCTGTGAAAAGGTCTTATTAAATGAGAAGACTTTGAAAGCACATATACTTTTACACGGTCCAAAAAACTTCAGCTGTGAAATATGTGGAAGAACTTACgttagtaaaaaaaaactacaatatcACATTCAGTTCTCCCATCCAGaaaataaacatTCGTGTAACATGTGCAGCAAGGAGTAtaatcaaaaaagtgacttggAGGTTCACATTAAGTCACATTATGGACAAAATAATTATCCCTGTGAAACATGTGGAAAAAGTTTTACATATAAGGGTTCTCTGTTCCAACATAAAAGAATTCATACTGgtGACACAAAGTATCAGTGTAAAGAGTGCCTTAAAATATGTATCAATAAGCGTAATCTAGAGATCCACATGCGCGTCCATACCGGAGATAAACCATTCTCTTGCAACGTCTGTGGAAAATCGTTTGCTCAAAAGACTAACATGTACGCTCATATGAAAATCCATACCGGAGAGAAGAATCACGTCTGTAAAATATGTGGCAAAGCTTTTTATGATGGCAGAGGACTGAAAAAACACCTTGCAGTTCATGATAAAAATGGAGAACTTGAAAGCTCAGAGTAG
Protein Sequence: MLPLNSYPKICRTCLAQDELYLIDEVNWEGLNLKEVIQNWTPLELKENDKLPRMMCKCCIKDMYQTYHFLFKCKKSEKTLQGIIDQEIVDKHVLKTKVSEIEVYVNKRYEKNNLLKSGTENKDDNHSDIECTHNRPRLRSKELKNDMSKDREKNENTIKLLKITNIKTEIKQHDTKSKVNIKNYQETVNSDNLTDLDDTRELKNDDSDTEEKTNALPDISKVNLEMKQTEIKNKVMLRKRVKAQLIDKSDLPKRKKRNIFRKGPPYTCITCDTIFENYEELSKHKIETKHKKSYKFICPYCQRKHDAYCRYVEHIRTHTGEKPNKCSTCGKCFNFQTDLKRHMITHMEIKPYNCRFCNKGFTRKQYLTNHERKHTGEKLTLVCLFCGKVFHSYWTLLYHEKTHKQCAKDRKSKDKSFQCHLCEKVLLNEKTLKAHILLHGPKNFSCEICGRTYVSKKKLQYHIQFSHPENKHSCNMCSKEYNQKSDLEVHIKSHYGQNNYPCETCGKSFTYKGSLFQHKRIHTGDTKYQCKECLKICINKRNLEIHMRVHTGDKPFSCNVCGKSFAQKTNMYAHMKIHTGEKNHVCKICGKAFYDGRGLKKHLAVHDKNGELESSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -