Sory009105.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:650029-657346[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.016 0.86 9.9 2.6 1 23 53 75 53 75 0.98 2 22 0.18 9.2 6.7 6.5 1 23 93 115 93 115 0.99 3 22 0.097 5 7.5 0.1 2 23 118 139 117 139 0.94 4 22 0.003 0.16 12.2 3.4 1 23 176 199 176 199 0.96 5 22 0.00058 0.03 14.5 0.5 1 23 205 228 205 228 0.92 6 22 0.0019 0.097 12.9 0.9 3 23 241 262 240 262 0.94 7 22 9.7e-06 0.0005 20.1 0.4 1 23 273 295 273 295 0.98 8 22 0.0056 0.29 11.4 1.0 1 23 301 323 301 323 0.95 9 22 0.00015 0.008 16.3 1.1 1 23 329 351 329 351 0.99 10 22 0.0016 0.081 13.1 1.3 1 21 357 377 357 378 0.95 11 22 3.5 1.8e+02 2.6 1.4 3 23 445 465 443 465 0.90 12 22 0.0068 0.35 11.1 0.6 2 23 468 489 467 489 0.96 13 22 0.01 0.54 10.5 0.1 2 23 496 518 495 518 0.94 14 22 4e-05 0.0021 18.1 0.4 2 23 570 591 569 591 0.96 15 22 0.021 1.1 9.6 2.6 1 23 609 631 609 631 0.98 16 22 0.054 2.8 8.3 0.1 1 23 633 655 633 655 0.96 17 22 0.017 0.88 9.9 0.2 2 23 695 717 694 717 0.96 18 22 0.062 3.2 8.1 2.3 1 23 723 746 723 746 0.94 19 22 0.00041 0.021 14.9 0.3 2 21 758 777 758 778 0.93 20 22 0.0029 0.15 12.3 0.6 1 23 806 828 806 828 0.90 21 22 2.2e-06 0.00011 22.1 2.0 1 23 834 856 834 856 0.97 22 22 7.9e-06 0.00041 20.3 1.3 1 21 863 883 863 884 0.96
Sequence Information
- Coding Sequence
- ATGAATAATTTTAGGAACACCCCAAGGAGAATTAGAACAAAACATGAGctctctataataattttggaAAACAGCGATTCACCCAAAAGTTCAGATATAGTAGGCGACGAATGCAAAAAGAATAAACTGTCAGACACAAAATCAAGCAAGGCAGATTATAAATGTCAGATTTGCCTGAAAGTTTACACGTCCTTGCGTCTCTTAAATTTCCATAGGAAAAAACACAAGTTTGAAAAACAGGATCCTTCGTACACGTTTGATAACCTCAAACAGACTTATCGCTGCAATacttgttttaataaatttcaaCACAAGCATGAAATCAAGGAGCACATTAAAGTGCACTCTTGTATGTGTCCAGTATGTTACGAATACTTTCCAACAGCATTGCTGCTAGGTTGGCATATGGCGGAGCATAATCCGGACGGCTACGTAAGTTGCCCACTCTGTGATCATAAGTATAAGACTTTTTACGGCAATATTCTACAAGCACATATTAGGAAAACTCACGAAAAACTAGATGCCCACTACTGCAAACATTGCGGTTCGTCgtatttcaagaaaaatcaACTCATCGAGCACATAAACGTCGTCCATTTAAAACGCGATCCTTACAAATGCGTTGTTTGTGATAAGCAGTTTATAATGAGTGCCAGCTTGTACAAACATCAAGTCGAAAAGCATAAAGTATTAATTGATGGGGATCTCCCCACAAACTCTTGTCTAGTTTGTAAAACAACTTTCAGAAAAGTATCTGCTTTGGAAAAACACCTAAATGAAAAGCATCGCAATCCAAAATTGAAGAAACAGCAGACTTATGTTTGTGATACTTGTGGTAAAGGATTCGGATATAGGCAAAGTTTAAAAGTTCACCAGCGAGGCCACGAAGGAATCAAACCATTCAAATGTTCGTTTTGTTCTAAAGTGTTTAAGTTGAATTCGCAGAGGTTAGTTCACGAAGCAGTCCATACAAATATCAGGCCGTATTCCTGCGATCAGTGTGGACTTCGATTTAAACTAATGAAAACTTTGAGGGTCCATTTAAATACTCACAAAGTAGAAAAATCTTTTGTGTGTGAGTTCTGCAAGAAAGGGTACAATAGAGCTGATCATTACAAGTTACACCTAAAGAATTGTAAAAGAAGTCCTATACATTGCAAGAAAtattttaagaaaagaAGACGCAGAAAATCATATTCCTCTAAATTACCTGAATATCCTTGTACCGATTGTTCAAACGTATCTTTAACGCAAAGAACAGCAAATCTACATAAACATCTTCATAAAGACGAATCTTTCTATACCGTTGATAGAACGAAAAAACTTTTTCTTTGTATTTACTGTTCAGCTAGGTATTCTTCTAAGAAAGAAATCCGAAATCATTTTACTAGTCATTCCATTACCTGCAAAGAATGCAGTATCTCATTTGACAATCCGTTTTGCCTTGGATTACATATGGCTCAACACGATCAAAGTGAACGCGTATCTTGCCCTCTTTGTGATTATAAAGGCACTTTTGCTGTTTCTTTAAGAAAACACATTTCCAATATCCATTTTGAGGTATTAAAAGATACTAAATATGatcaagaagaagaagaaaatcaCGTGCCTTCAAGAAAGtcaaaaataagcaaaaacgATATTGACAGACTTCGAAGGGAGTTAAACACAAAAAGAAAACGAGAACAGAGACtgaaaactaaattaatatgTAGCATTTGTGGAAAGAAATATCCTACCATTAAAGACCTGAGGAATCATAGAAAAGTTCACAAGGCCGAACGAATGGAATTGCTGTTTGCCTTTAATCCTTTAAGAAAAGCGTATTCATGTGACACATGTCATCAAGAGTTTCGAGAAGAACATGAAATACAAAGCCACGTTGAAACTCATACATATACTTGTAGTGTATGTTCTGTTGACTTCaaaaaacctatatttttagGGTTACACATGGCCGAACATAACGACAAAGGTGAGATTAGCTGTCCTTTATGCGATCACGAGTTTAAAACGTTGTGCAAAAGTAGGCTATTGAGGCATATTAAACAGAAGCATCAGAAGGAACGCCCCAAAACAAGTCAATGTGAGTATTGTGGGTCGTCATATTTATCAAAGCAGATGCTAGAAGACCATATCAAAGTAATTCATTTACAAAAGGAACCGTATAAGTGTATCGTGTGCGAACACACGTTTACTTTGAAGTCAAGTATGAGGATACATCAAATAAACAAGCACAGGGTCGTAGACGAAAGCGAATTATCGTCAAACTACTGTACATTATGCAAAATGTCCTTTAAAAAGCCTTCGTCTTTGGCTAAGCATCTGGAAATGAAAAGGTGCGTGCCAACACCTAGGTTTCGTTTCTACAAAACCTTCAATCTGCACCAAAGGGATCACGCAGGAGACAAGCCATATAAATGTTCCTACTGCCCGAAATCTTTTGTTATTAATTCTAAGAGGCTTGCTCACGAAGTTTCCCACACGGATGCCAGGCCATATTCCTGCGAGACTTGCGGACAGAGTTACAAAACCTGGAAGCATCTTAGGCGACATCTAGTCGTTCACAATTCGAGCGTACTCCCATTTACGTGTCATTTTTGTGATAGAGAATTTTCGACTAAAGACACCTTAAGAGCACACGTGAGGCTGTGTTCGAAAAAGTACTTAGTtccttataatattaataattaa
- Protein Sequence
- MNNFRNTPRRIRTKHELSIIILENSDSPKSSDIVGDECKKNKLSDTKSSKADYKCQICLKVYTSLRLLNFHRKKHKFEKQDPSYTFDNLKQTYRCNTCFNKFQHKHEIKEHIKVHSCMCPVCYEYFPTALLLGWHMAEHNPDGYVSCPLCDHKYKTFYGNILQAHIRKTHEKLDAHYCKHCGSSYFKKNQLIEHINVVHLKRDPYKCVVCDKQFIMSASLYKHQVEKHKVLIDGDLPTNSCLVCKTTFRKVSALEKHLNEKHRNPKLKKQQTYVCDTCGKGFGYRQSLKVHQRGHEGIKPFKCSFCSKVFKLNSQRLVHEAVHTNIRPYSCDQCGLRFKLMKTLRVHLNTHKVEKSFVCEFCKKGYNRADHYKLHLKNCKRSPIHCKKYFKKRRRRKSYSSKLPEYPCTDCSNVSLTQRTANLHKHLHKDESFYTVDRTKKLFLCIYCSARYSSKKEIRNHFTSHSITCKECSISFDNPFCLGLHMAQHDQSERVSCPLCDYKGTFAVSLRKHISNIHFEVLKDTKYDQEEEENHVPSRKSKISKNDIDRLRRELNTKRKREQRLKTKLICSICGKKYPTIKDLRNHRKVHKAERMELLFAFNPLRKAYSCDTCHQEFREEHEIQSHVETHTYTCSVCSVDFKKPIFLGLHMAEHNDKGEISCPLCDHEFKTLCKSRLLRHIKQKHQKERPKTSQCEYCGSSYLSKQMLEDHIKVIHLQKEPYKCIVCEHTFTLKSSMRIHQINKHRVVDESELSSNYCTLCKMSFKKPSSLAKHLEMKRCVPTPRFRFYKTFNLHQRDHAGDKPYKCSYCPKSFVINSKRLAHEVSHTDARPYSCETCGQSYKTWKHLRRHLVVHNSSVLPFTCHFCDREFSTKDTLRAHVRLCSKKYLVPYNINN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -