Sory003015.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitophilus oryzae
Gene Symbol
-
Assembly
GCA_002938485.2
Location
NW:1880115-1988549[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.031 1.6 9.0 1.5 1 23 13 36 13 36 0.94
2 25 0.09 4.7 7.6 5.6 1 23 220 242 220 242 0.98
3 25 0.00014 0.0072 16.4 4.3 1 23 251 273 251 274 0.95
4 25 0.0062 0.32 11.2 2.4 1 23 395 417 395 417 0.99
5 25 0.029 1.5 9.1 2.0 1 23 426 449 426 449 0.97
6 25 0.22 11 6.4 1.8 1 23 463 485 463 485 0.98
7 25 0.06 3.1 8.1 2.4 1 23 494 517 494 517 0.97
8 25 9.2 4.8e+02 1.2 2.4 1 23 531 553 531 553 0.95
9 25 0.16 8.5 6.8 9.0 1 23 570 592 570 592 0.97
10 25 0.00014 0.0071 16.4 1.8 1 23 601 623 601 623 0.96
11 25 0.048 2.5 8.4 2.8 1 23 694 716 694 716 0.94
12 25 0.00027 0.014 15.5 0.6 1 23 1068 1090 1068 1090 0.98
13 25 0.00011 0.0057 16.7 0.4 2 22 1100 1120 1099 1122 0.89
14 25 0.037 1.9 8.8 2.9 1 23 1167 1189 1167 1189 0.98
15 25 0.0028 0.15 12.3 0.5 1 22 1198 1219 1198 1221 0.90
16 25 0.0018 0.096 12.9 2.5 1 23 1266 1288 1266 1288 0.99
17 25 7.6e-05 0.0039 17.2 2.9 1 23 1297 1320 1297 1320 0.95
18 25 0.028 1.5 9.1 2.9 1 23 1334 1356 1334 1356 0.99
19 25 3.7e-05 0.0019 18.2 0.5 1 22 1365 1386 1365 1388 0.90
20 25 0.0018 0.096 12.9 2.5 1 23 1526 1548 1526 1548 0.99
21 25 4.2e-05 0.0022 18.0 2.9 1 23 1557 1580 1557 1580 0.95
22 25 0.0018 0.096 12.9 2.5 1 23 1594 1616 1594 1616 0.99
23 25 0.00015 0.0079 16.3 0.5 1 22 1625 1646 1625 1648 0.90
24 25 0.028 1.5 9.1 2.9 1 23 1754 1776 1754 1776 0.99
25 25 2e-05 0.0011 19.0 2.8 1 23 1785 1808 1785 1808 0.95

Sequence Information

Coding Sequence
ATGGAAGCACACAAACCACATAAAGAGAGAATCCTCTACTTCTGTACACCATGCAAGCGCGGCTTCACTACTCTTGCTTCTTTGAAGTACCactataatataaaacatagaGAAGACTATGAACAGCTAGGATTCACAATGAAAAGATTCACTTGTTCCGAATGTTCGTGTGAAATTTTAGGCGAACGGAGGTATCTCATGCACATGGAGAGACATAAACAAAAACACAATCTAGCAAATCACATAAAGATGCACAAAAAATCCAGCCCAACACGCACTGTTTTGGACATTGAACCAATTAGTGTGGAACATGTTAATGAAGAAAACAATATTTCAGAGGAAAATATAAATGCATCGTCATCAGATACTAAACAAGAACTCACATCCAATGAAGCTTCTAACAAAAACTCAATAAGCATAGTAGACATTGAAgaagataataataaaaatgatagtggcgataaaaatttaaatgggATAGAAGAGACTGTAAATTTCACAACAGGCAAATCTACACAGCACAAAGGCACTGTTTTGAACGTTGAACCAATTAGTGAGGAACATGTTAATGAAGAAAATAATGTTTCGGAAGAAAATATAAATGCGTCATCATCAGATATTAAGCAAGAATTAACAAAAAAAGTGCGGATGAAGATGTATCACTGTTCCATGTGTGACTACAAAACGATACAGATCTGTAACTTAAAGCGACACAAGCAAGTTCACTTGTCATGGGACGAACGATATCCGTTTGTTTGTACGCACTGCGGCAAGAAATTTGCTACTACTATCAAGTTAAAACAACACATATTGCAGcatcatcatttttttattcattccAGCGCAAACACTGCTTTGAACAGCGAACCCATTAGTGTGGAACATGTTAATGAAGAAAATATAAATGCGTCATCATCAGATATTAAGCAAGAATTATTCACAACGGATACTGTCGTTAATACCGAATCAGTAATTTTGGATAATCTTAAACAAGAAAATCATTCAgaagaaaatataaatgtatCATCATCAGATATTAATCTAAAACTGaaCACATCTAATAAAGCATCtaacaaaaaatcaataagCATAGTAGACATCACAGAAGAAAATGATAATAGTGATGAAAATGTAAATGTGATAGCAAAGATTATAAAGTTGGGGAACAATTCCCATGTGGTTTATAAATGTAACAAATGTGGCTTTCAAAGTATGAGAAAAAATTTGTTACTAAAACACGTGCAAAAACACCTACCACTCGAAAAAAGAAAACGGCACCAGTGCCCAACTTGCGGCGGCATGTATTCTAATCTTAACAGTTTTAAGTTCCATATGAGGGTTCGACATAATCAAGTCAGcacAGGGGACAAGTACAACCCACCAATATTTAAATGTACCCAATGTCACATCATGAAGCCAAGTAAAAAACTTTTACTAATTCACATGGAATCACACAAACCACCTGAAGAGAGGAATCGCCACCAGTGTTCAGTTTGCTACAGTACCTTCACCGCTTTTGCTTCTTTAAAGTACCACATGAATATAAAACATAGAGAATACTGtGAACAGATAGGATTCGCAATGAAAAGATTCACTTGTTCCAAATGTTCGCGTGAAATTGTAGGCGAACGTAGGTATCACACGCACATGGAGAGACATAGACAGAACAGCAAAGAATCCAGaacaCAAGAAGTGCAGAAAGTTATGCATAACTGTTCCATGTGTGACTTCAAAACGATACACAAGTGTAACTTGACACGACACAAGAGGGTTCATTTGGCATTGGAAGAGCGACAGCTGTTTGCTTGTGGTCACTGCGACAAGAAATATACTGTAAAGGCATCGTTGAAACAACATCTTATGCAACACAGAAATATTCATGACGTTGAACGTACAAGCTCGGAAGGCAATAATCAAGAAGAGCAAGTTCAAAACAGCGTAGAACAGAAGTTAGAGCTGGATACTCGCGCTAGTGATCTTTCCAGTATAGAAAACAACGAACAAGAGAAAACTCTTATAATCAAGGAAGAACTTGATGGCGTTTTACGATttaaaagAACAACTATGCagaaaataatgtttaaatGTCACCTGTGTGACTACATAACGACAGACATGTCTAACTTTGGTCGTCACAAGGCATTTCACTTGGTACCGCAAAAACACCAGTTGTTTGCTTATGCGCAGTGCAACCAAACATTAATGACAAGAAAGGCCTTACAAACTAATCACCTTGGTAATAATCATACCAATTCCAGTGATATTCACGACGTTGAACTTACAAGCTCGGAAGGCAATATTCAAGAAGAGCAAGTTCAAAACTGCATAGAACCGAAGTTAGAGCTtGATATCCATTACGATGAACTTACCATCGCGGGGGACTATAAACAAGAagaatattttcaaaccaatatTTTATCTGATGATAAGTTAGAGCTCGACATCAATACTGTCGATCTTACCAGCACAGAGACCAATGAACAAGAAGAACACGTTTCAAACAGTGTAGAACAGAAATTAGAACTTGTTGTTGTTCTAAACAGAGTAGATGCTGATGGTGTTGTAAATAATACTGTCGATCTTACCAGCACAGAGACCAACGAACAAGAAGAACAAGTTTCAAACAGTGTAGAACAGAAGTTAGAACTTGTTGTTGTTCTAAACAGACTAGATTCTGATGGTGTTGTAAATAATACTGTCGATCTTACCAGCACAGAGACCAACGAACAAGAAGAACAAGTTTCAAACAATGTAGAACAGAAGTTAGAACTTGTTGTTGTTCTAAACAGACTAGATTGTGATGGTATTGTAAATAGTGATATTCAGGCTATTAAACTTACCAGTACGGTAGACCATAAACAAGAAAACCATGTTCAAAAGAGGGAAGCATCTGATAGTGAGGAGTTTGATATTCAGGCTATTGAGCTTACCAGTACGGTAGACAATAAACAAGAAAACCATGTTCAAAAGAGGGAAGCATCTGATAGTGAGGAGTTTGATATTCAGGCTATTGAGCTTACCAGTACGGTAGACAATAAACAAGAAAACCATGTTCAAAAGAGGGAAGCATCTGATAGTGAGGAGTTTGATATTCAGGCTATTGAGCTTACCAGTACGGTAGACAATAAACAAGAAAACCATGTTCAAAAGAGGGAAGCATCTGATAGTGAGGAGTTaactATTGAAGTGGATAAACGGGTCTATGACTGTACCGTGTGTGGCTACCAAActactattaaaaaaaacttagaaCGACACCAGCAAGTTCACTTAAGTCGGGAAGAACGACAGTTGGTTTCTTGTCCGCTCTGCGACAAAAAATATACGACAAAGAGCAGCTTAAACTATCATCTTGTCGGAAATCACCATGCTTTCACTGAAGGTGGTACTATTGAACTTACCCGCGCGGAAGGCAATGCACAAGAAGAACATGTTCAAAACAGCGTAACATCCCATGATAAGTTGAAGCCtagGACTATGGAATTGAATCAACGTATCTATAAATGTAACATGTGTGACTACCGAACGCTAAGaaacagatttttaaaaaaccacCAGCAAGTTCACTTACCACGGGAAGAACGACAGTTGTTTCCTTGTCCGctctgcaacaaaaaatatatgacaAATCAAAAATTAAACTCTCATCTTGTCGGAAATCACCCTGACTTCACTGAAGGCCGTACCGTTGAACATACCGGCGCGGAAGGCAATGAACAAGAAGAACATGTTCAATACAGCGTAATATCCGATGATGAGTTAGAGCCtagAACTATGGAACTGAATAAACGGGTCTATAAATGTACCATGTGTGACTACCAAACGATAAAGAACAAATACTTAAAAAGCCACCAGCAAGTTCACTTACCACGGGAAGAACGACGATGGTATACTTGTCCGATTTGCGACAGAAAATATGCGAGAAATATCCATTTACGCCACCATCTTGTCAAAAACCATCCTGACTTCATtagAACTAATGAAGTGGAGAAACGGGTCTATAAATGTACCATGTGTGACTACAAACCGAAAAAGAACAAATACTTAAAAAGCCACCAGCAAGTTCACTTACCACGGGAAGAACGACGGTGGTTTACTTGTCCGATCTGCGACAAAAAATATACGACAAAGGTCAGCTTAAACTATCATCTTGTCGGAAATCACCCTGACTTCACTGAAGGCCGTACTGTTGAACATACCGGCGCGGAAGACAATGAACAAGAAGAACATGTTCAAAACAGCGTAACATCCGATGGCGAGTTAGAGACCGAAGACCGTACTGTTGAACATACCGGCGCGGAAGGCAGTGAACAAGAAGAACATGTTCAAAACAGCGTAACATCCGATGATGAGTTAGAGCCTGAAGGCCGTACCGTTGAACATACCGGCGCGGAAGGCAATGAACAAGAAGAACATGTTCAATACAGCGTAATATCCGATGATGAGTTAGAGCCTGAAGGTCGTACTGTTGAACTTACTGGCGCGGAAGGCAATGAACAAGAAGAACATATTCAAAACAGCGTAACATCCCATGATAAGTTGGAGCCtagGACTATGGAACTGAATAAACGGGTCTATAAATGTACCATGTGTGACTACCAAACGATAAAGAACAAATACTTAAAAAGCCACCAGCAAGTTCACTTACCACGGGAAGAACGACGTTGGTATACTTGTCCGATCTGCGACAGAAAATATGCGAGAAATGTCCATTTACGCCACCATCTTGTCAAAAACCATCCTGACTTCATtagAACTAATGAAGTGGAGAAACGGGTCTATAAATGTACCATGTGTGACTACCAAACGATAAAGAACAAATACTTAAAAAGCCACCAGCAAGTTCACTTACCACGGGAAGAACGACGGTGGTTTACTTGTCCGATCTGCGACAGAAAATATACGACAAAGATCAGCTTAAACTATCATCTTGTCGGAAATCACCGTGACTTCACTGAAGGCCGTACTGTTGAACATACCGGCGCGGAAGACAATGAACAAGAAGAACATGTTCAAAACAGCGTAACATCCGATGGCGAGTTAGAGACCGAAGACCGTACTGTTGAACATACCGGCGCGGAAGGCAGTGAACAAGAAGAACATGTTCAAAACAGCGTAACATCCGATGATGAGTTAGAGACTGAAGGTCGTACTGTTGAACTTACCGGCGCGGAAGGCAATGAACAAGAAGAACGTGTTCAAAACAGCGTAACATCCCATGATAAGTTGGAGCCaACTATGGAACTGAATAAACGAGTCTATAAATGTACCATGTGTGACTACAAACCGAAAAAGAACAAATACTTAAAAAGCCACCAGCAAGTTCACTTATCACGGGAAGAACGACGGTGGTATACTTGTCCGATCTGCGACAGAAAATATACGAGAAATACCTCTTTACGCCACCATCTTGTCAAAAACCATCCTGACTTCACTGAAAGCCGTACTGTTGACCTTACCGGCGCTGATGACAAGGAACgtgaaaaacattttcaaaacagCATAACATCTGATAaAATAATTGATGAATCTATATCTATAATGAATGAAGAAAATgcagaaagttttataaaaatggaAATTGATGATGGCGCTCCAACTTTGGATGAAGGCATGCACTATGACTTCGAAAATGCCGATCTATCTGAAACTAATATAGCAAAGCCAGGAGATCTTATAGAAATAGAAATTGATGATAAAGCTCCGCTTTTGGATTttaaTAACTGGGACCTTGTAGATCAACCTGAACAAGTCAAAATAGAAGATATTGTAACACTTCTACAACCTGAATCTTCATAA
Protein Sequence
MEAHKPHKERILYFCTPCKRGFTTLASLKYHYNIKHREDYEQLGFTMKRFTCSECSCEILGERRYLMHMERHKQKHNLANHIKMHKKSSPTRTVLDIEPISVEHVNEENNISEENINASSSDTKQELTSNEASNKNSISIVDIEEDNNKNDSGDKNLNGIEETVNFTTGKSTQHKGTVLNVEPISEEHVNEENNVSEENINASSSDIKQELTKKVRMKMYHCSMCDYKTIQICNLKRHKQVHLSWDERYPFVCTHCGKKFATTIKLKQHILQHHHFFIHSSANTALNSEPISVEHVNEENINASSSDIKQELFTTDTVVNTESVILDNLKQENHSEENINVSSSDINLKLNTSNKASNKKSISIVDITEENDNSDENVNVIAKIIKLGNNSHVVYKCNKCGFQSMRKNLLLKHVQKHLPLEKRKRHQCPTCGGMYSNLNSFKFHMRVRHNQVSTGDKYNPPIFKCTQCHIMKPSKKLLLIHMESHKPPEERNRHQCSVCYSTFTAFASLKYHMNIKHREYCEQIGFAMKRFTCSKCSREIVGERRYHTHMERHRQNSKESRTQEVQKVMHNCSMCDFKTIHKCNLTRHKRVHLALEERQLFACGHCDKKYTVKASLKQHLMQHRNIHDVERTSSEGNNQEEQVQNSVEQKLELDTRASDLSSIENNEQEKTLIIKEELDGVLRFKRTTMQKIMFKCHLCDYITTDMSNFGRHKAFHLVPQKHQLFAYAQCNQTLMTRKALQTNHLGNNHTNSSDIHDVELTSSEGNIQEEQVQNCIEPKLELDIHYDELTIAGDYKQEEYFQTNILSDDKLELDINTVDLTSTETNEQEEHVSNSVEQKLELVVVLNRVDADGVVNNTVDLTSTETNEQEEQVSNSVEQKLELVVVLNRLDSDGVVNNTVDLTSTETNEQEEQVSNNVEQKLELVVVLNRLDCDGIVNSDIQAIKLTSTVDHKQENHVQKREASDSEEFDIQAIELTSTVDNKQENHVQKREASDSEEFDIQAIELTSTVDNKQENHVQKREASDSEEFDIQAIELTSTVDNKQENHVQKREASDSEELTIEVDKRVYDCTVCGYQTTIKKNLERHQQVHLSREERQLVSCPLCDKKYTTKSSLNYHLVGNHHAFTEGGTIELTRAEGNAQEEHVQNSVTSHDKLKPRTMELNQRIYKCNMCDYRTLRNRFLKNHQQVHLPREERQLFPCPLCNKKYMTNQKLNSHLVGNHPDFTEGRTVEHTGAEGNEQEEHVQYSVISDDELEPRTMELNKRVYKCTMCDYQTIKNKYLKSHQQVHLPREERRWYTCPICDRKYARNIHLRHHLVKNHPDFIRTNEVEKRVYKCTMCDYKPKKNKYLKSHQQVHLPREERRWFTCPICDKKYTTKVSLNYHLVGNHPDFTEGRTVEHTGAEDNEQEEHVQNSVTSDGELETEDRTVEHTGAEGSEQEEHVQNSVTSDDELEPEGRTVEHTGAEGNEQEEHVQYSVISDDELEPEGRTVELTGAEGNEQEEHIQNSVTSHDKLEPRTMELNKRVYKCTMCDYQTIKNKYLKSHQQVHLPREERRWYTCPICDRKYARNVHLRHHLVKNHPDFIRTNEVEKRVYKCTMCDYQTIKNKYLKSHQQVHLPREERRWFTCPICDRKYTTKISLNYHLVGNHRDFTEGRTVEHTGAEDNEQEEHVQNSVTSDGELETEDRTVEHTGAEGSEQEEHVQNSVTSDDELETEGRTVELTGAEGNEQEERVQNSVTSHDKLEPTMELNKRVYKCTMCDYKPKKNKYLKSHQQVHLSREERRWYTCPICDRKYTRNTSLRHHLVKNHPDFTESRTVDLTGADDKEREKHFQNSITSDKIIDESISIMNEENAESFIKMEIDDGAPTLDEGMHYDFENADLSETNIAKPGDLIEIEIDDKAPLLDFNNWDLVDQPEQVKIEDIVTLLQPESS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-