Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:356556-385899[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3e-05 0.0015 18.5 0.7 1 23 166 188 166 188 0.95

2 15 0.0051 0.26 11.5 0.5 3 23 196 216 195 216 0.99

3 15 5.5e-05 0.0029 17.7 0.1 1 23 302 324 302 324 0.98

4 15 0.017 0.88 9.9 0.4 1 23 330 353 330 353 0.97

5 15 2e-07 1e-05 25.4 2.9 1 23 378 400 378 400 0.98

6 15 0.013 0.67 10.2 0.2 1 23 413 435 413 435 0.94

7 15 0.11 6 7.2 0.2 1 23 441 464 441 464 0.96

8 15 0.23 12 6.3 2.2 1 19 470 488 470 489 0.91

9 15 9.9e-05 0.0051 16.9 4.3 1 23 498 520 498 520 0.97

10 15 0.0061 0.31 11.3 0.3 2 23 526 547 525 547 0.96

11 15 9.6e-06 0.0005 20.1 0.4 1 23 555 577 555 577 0.98

12 15 0.0042 0.22 11.8 0.2 3 23 585 605 583 605 0.97

13 15 0.00013 0.0069 16.5 0.3 1 23 611 633 611 634 0.95

14 15 2.3 1.2e+02 3.2 0.6 1 23 648 670 648 670 0.95

15 15 0.0002 0.01 15.9 0.1 1 20 1068 1087 1068 1090 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3e-05	0.0015	18.5	0.7	1	23	166	188	166	188	0.95
2	15	0.0051	0.26	11.5	0.5	3	23	196	216	195	216	0.99
3	15	5.5e-05	0.0029	17.7	0.1	1	23	302	324	302	324	0.98
4	15	0.017	0.88	9.9	0.4	1	23	330	353	330	353	0.97
5	15	2e-07	1e-05	25.4	2.9	1	23	378	400	378	400	0.98
6	15	0.013	0.67	10.2	0.2	1	23	413	435	413	435	0.94
7	15	0.11	6	7.2	0.2	1	23	441	464	441	464	0.96
8	15	0.23	12	6.3	2.2	1	19	470	488	470	489	0.91
9	15	9.9e-05	0.0051	16.9	4.3	1	23	498	520	498	520	0.97
10	15	0.0061	0.31	11.3	0.3	2	23	526	547	525	547	0.96
11	15	9.6e-06	0.0005	20.1	0.4	1	23	555	577	555	577	0.98
12	15	0.0042	0.22	11.8	0.2	3	23	585	605	583	605	0.97
13	15	0.00013	0.0069	16.5	0.3	1	23	611	633	611	634	0.95
14	15	2.3	1.2e+02	3.2	0.6	1	23	648	670	648	670	0.95
15	15	0.0002	0.01	15.9	0.1	1	20	1068	1087	1068	1090	0.93

Sequence Information

Coding Sequence: ATGGATGGGTCGTTTAGTATAACCTGGGAGGACGCTACCACGGTGGTCCAATCAGAGGAAGTGATCACCATGGAGAATGAAATTATACCTTCGCAGTCTCAAGAGTTTATAGGGGATGAAACTGAGGAGACCTACGTGGAAAATGTCCAAGATGATGCCGAGTTGGCGTTGAATGAAGTATCGGTTGTTGAAGAGGAGGTGGTTCAAGATGATAGTGTGGAGGAGGTGACTTTGGAGAACCAGCAAGCTGATGGGGGCCTTATGTATTTGACTGaagaCAATGTACTAGTTATGGATTCAAACGAGGACACTCCTTACACACAAGATCAACTCATGGAAGTTACGGAAGAAGTTATAACAGATCAGTGGGGTGAGTGTCCAGAAGAGATGATCATTGGGTCGGAGGAAGCTGTGGGAGCTGTGGATGGTCAAGCAATTGAAGATGAAGATATACCGTTGCCTACCGACCAGGATGAGTATACGGCTGCCAGGCCATACCCTTGCGATTTTTGCAGTAGAAGgTTCCGTAAAAAGGCCAACCTTATGAACCACATGGTAGCGCATCAGACAGACAGACCCCACGGATGCAACCTATGTGGGGTGAGGTACTTGAGGAAGTCTGATTTAATGAACCACCTGAAAAGTCACGCCTATATACCAGAATCTGAACCCATTGAAGatGAGGATCTGTCACTGGGACATCAGGGTTTTGAAAGAAGAAAGAAAGTAAAAAGTTTGgtgaagaaaaagaaaaagagaaTCGTGAAAGAAGAGTATGAGAATTTATTTACAACTGAGccagTTTCAGCTGACGAAAAATATATAGGCGACATGGACGCCACCTACCTCACTACTTCCAGTCAAGAAGAGATCAGGTACCCGGTCATCGATCCAAAGAAACCTTTCGTCTGTCAGCACTGTGGCGTAGCGTTCGCCAGGGAGAAGGCATTGGCGTCCCATGCGAGGGTACATGGTGGTGACAGTCCTTTTGAATGTCAGAAATGCGGTGAGATGTTTTGGGATATCTCCCTTATGCAGGAACACTCTAGAACCAAACACGGTGAAATCGAGGACATCGACGACGACGAGGATGAAGACTATTCCGACTCCGAGGAGGCCAAATACGGGACGTTTTACTGTCCCACGTGCGGCCTGTCCTTCCATCGGCAGGACAACCTCAAGCGCCACCAAAGAATCCACGTCAAAGAGGAGTTCGTGCACGACGAAAGTTTCGGTCACATCTGTAACGTGTGTGGCGAATGCTTCCAGGAAGCTCTGGATCTACTTGCCCATGCGGAAATCCACGCTAGAGGCTCGGAATACCGGTGTATGGTGTGTGGAGAGATTTGTATGGACGAGACTACTTTAGCGGGTCATGTACAGAGTACTCACAAGAATCTACCACCGCACACGTGTATCCTGTGCGGCAGAACGTGTAAAGATAACAGAACGTTGATGAAACATTCCTGGGAACATTCTAAgGAAAAATGTTTTGCTTGTACAAAATGTTCGAAAACTTTCCACAATAAAGCCAGATTGAAACGACATATGATTTCTCACAGGAACAAAGTGGTATCGTGCGACGTGTGCGGCGAGGACTTCCCCGACGGCCGCAGCCTGATGAACCACCGGCACAGCCACAGCAGCGTCTCGGGACGGCAGTTCCCGTGCCGGGAATGCGGCAAGACGTTCGGTTCCAGGAGTTCGCAGCAGATCCACATTCGCATCCACACGGGCGAGAGACCCTACGGGTGCCGGTTCTGTTGGAAGGCCTTTGCCGACGGTGGGACTTTGAGGAAGCACGAGAGGATCCATACTGGGGAGAAGCCGTACGCGTGCGCGGTGTGTCCAAGGGCGTTCAATCAGAGGGTGGTGCTCAGGGAACATATAAGGTCACATCACTCGGGCCCAGATCCGAAATATTCACACAGTATGACGCCGTACTGCTGCGCCGTGTGTTCGGACATGTTCGCCGCATCTCAGGATCTGATCCTCCATCTGATCCACCATTGCGACATGAACACGGCGATGAAGCGCCAGCCTCAGATCGGGCCCAGAAAATACAAACGAAGAAGAAAACTGAAACCCCATGAGTTGGAAATGATGACAGCTCAGAACGAGGAGTCCTACAACAGCGACCAGGCCCTTTTGCAGAACGCCAATAACACTACCGACTCTGAGGAAGAGAGGGAGCGACGAAGAACTCGACCGAAACGCTCGTACACCAGGAAGCCTTCCAGTTCGCCAAAAACAAGCGTTAGCGAATCGATGTCGGACATCTACAACGCGGCCAGTACCATCGAAGCCGTGGAGAGCATCACCCTTCCCAAGTCTCCCACGTCCAAAACGAAACCCAAAAAGGGCAAGAACGACGCATCTGCGGTTCCTTCGCGTCCTAAAATGATCCACACACAGAAAACTAGGGTCCCTGTGGAGACTGGCGAGGACGGGAGGGTCAGACATAGGACAAGGACTTTGGTGACTAGGACACAACCGGCGGAAATCAAGTCAGTCACCGgtgAAAGAATAAGACCCAGAACCAAAAACGTCAGTTACCACGTGTTAAACCCGGAAAAATTCCCAATCGCCACTTTTCCATCAGCTGAACAGACCAACGAAGCAGTAGAGAGTCTTTTGAAAGAAGCAAGTGAGGAAATACCTACCAATGGTAATATCGTCACAGAAGAAATCGTGGAAGAAACTCCTGAAGTCGCGGGGGAACAGATTGTGGAAAGCGAACAAGTTCCGATACCTGTCGGCTTGGTGGAGGTCAGAACTAGGCGTAACAGCGCGAGAAGTACCAGAAATGTCATAGGTCCAGGAAGCAAAGTCAGGTTGGTGAAGGAAGGCATGATCATATCGAAAATGAAGAGATCCAGCGAGAGCCAGCTGGAACCGGAAACTATAGTACCGGAAACTATAGTACCGGATATGAATCCCACCGCTGCTGTGTATATTAAGGAGGAACATTTTAATACTTCaaATGATGATACATTAGAAACCAATGTAACCGAGGAAGAACAGCCCCAAGAAGAGCCTCAACCGACCAACGACCAATTTCAAACCGAAGAGACGGTCGACCAAAGGACACCCAACGGCAACCCGAACGTCATCAACGTCAAACAGGAAATGATGGACCCCAGCGCCCTTCACGAACTGGCCGAGCTCTCCATGCGTCACGCCAATCACATCACCGACCTGTTCAAGTGCGAGATGTGCGACGAGGTGTTCACGGATCGCGCGCAGCTGCTGTTGCACGTGCCCATTCATATTTGA
Protein Sequence: MDGSFSITWEDATTVVQSEEVITMENEIIPSQSQEFIGDETEETYVENVQDDAELALNEVSVVEEEVVQDDSVEEVTLENQQADGGLMYLTEDNVLVMDSNEDTPYTQDQLMEVTEEVITDQWGECPEEMIIGSEEAVGAVDGQAIEDEDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYLRKSDLMNHLKSHAYIPESEPIEDEDLSLGHQGFERRKKVKSLVKKKKKRIVKEEYENLFTTEPVSADEKYIGDMDATYLTTSSQEEIRYPVIDPKKPFVCQHCGVAFAREKALASHARVHGGDSPFECQKCGEMFWDISLMQEHSRTKHGEIEDIDDDEDEDYSDSEEAKYGTFYCPTCGLSFHRQDNLKRHQRIHVKEEFVHDESFGHICNVCGECFQEALDLLAHAEIHARGSEYRCMVCGEICMDETTLAGHVQSTHKNLPPHTCILCGRTCKDNRTLMKHSWEHSKEKCFACTKCSKTFHNKARLKRHMISHRNKVVSCDVCGEDFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSMTPYCCAVCSDMFAASQDLILHLIHHCDMNTAMKRQPQIGPRKYKRRRKLKPHELEMMTAQNEESYNSDQALLQNANNTTDSEEERERRRTRPKRSYTRKPSSSPKTSVSESMSDIYNAASTIEAVESITLPKSPTSKTKPKKGKNDASAVPSRPKMIHTQKTRVPVETGEDGRVRHRTRTLVTRTQPAEIKSVTGERIRPRTKNVSYHVLNPEKFPIATFPSAEQTNEAVESLLKEASEEIPTNGNIVTEEIVEETPEVAGEQIVESEQVPIPVGLVEVRTRRNSARSTRNVIGPGSKVRLVKEGMIISKMKRSSESQLEPETIVPETIVPDMNPTAAVYIKEEHFNTSNDDTLETNVTEEEQPQEEPQPTNDQFQTEETVDQRTPNGNPNVINVKQEMMDPSALHELAELSMRHANHITDLFKCEMCDEVFTDRAQLLLHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -