Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:297858-301150[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2 1.1e+02 3.3 3.7 1 23 73 95 73 95 0.94

2 15 0.38 20 5.6 1.6 2 23 101 122 101 122 0.97

3 15 0.0021 0.11 12.7 6.5 1 23 128 150 128 150 0.98

4 15 3.7e-06 0.0002 21.4 1.6 1 23 156 178 156 178 0.98

5 15 0.033 1.7 8.9 2.6 1 23 185 208 185 208 0.93

6 15 0.0003 0.016 15.4 0.4 3 23 217 237 216 237 0.93

7 15 7.3e-05 0.0038 17.3 2.0 1 23 242 265 242 265 0.97

8 15 0.00012 0.0062 16.6 0.4 2 23 269 291 269 291 0.94

9 15 1e-05 0.00053 20.0 0.7 3 23 300 321 299 321 0.97

10 15 1.2e-05 0.00063 19.7 1.6 2 23 329 350 328 350 0.97

11 15 4.9e-05 0.0025 17.9 0.5 1 23 354 376 354 376 0.96

12 15 2.9e-05 0.0015 18.6 0.5 1 20 382 401 382 404 0.93

13 15 0.0011 0.057 13.6 5.5 1 23 410 432 410 432 0.98

14 15 2.7e-05 0.0014 18.7 3.6 1 23 438 460 438 460 0.98

15 15 2.1e-05 0.0011 19.0 4.3 1 23 466 489 466 489 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2	1.1e+02	3.3	3.7	1	23	73	95	73	95	0.94
2	15	0.38	20	5.6	1.6	2	23	101	122	101	122	0.97
3	15	0.0021	0.11	12.7	6.5	1	23	128	150	128	150	0.98
4	15	3.7e-06	0.0002	21.4	1.6	1	23	156	178	156	178	0.98
5	15	0.033	1.7	8.9	2.6	1	23	185	208	185	208	0.93
6	15	0.0003	0.016	15.4	0.4	3	23	217	237	216	237	0.93
7	15	7.3e-05	0.0038	17.3	2.0	1	23	242	265	242	265	0.97
8	15	0.00012	0.0062	16.6	0.4	2	23	269	291	269	291	0.94
9	15	1e-05	0.00053	20.0	0.7	3	23	300	321	299	321	0.97
10	15	1.2e-05	0.00063	19.7	1.6	2	23	329	350	328	350	0.97
11	15	4.9e-05	0.0025	17.9	0.5	1	23	354	376	354	376	0.96
12	15	2.9e-05	0.0015	18.6	0.5	1	20	382	401	382	404	0.93
13	15	0.0011	0.057	13.6	5.5	1	23	410	432	410	432	0.98
14	15	2.7e-05	0.0014	18.7	3.6	1	23	438	460	438	460	0.98
15	15	2.1e-05	0.0011	19.0	4.3	1	23	466	489	466	489	0.94

Sequence Information

Coding Sequence: ATGGATAATGATAGCAGTAACAGTATAGAATACTTTGGCGATGCTCTTGTCCCAAAAATTGAAAGTGAAATAAGTTTAATTGTTAAGGAAGAGCCACTTCACGAATGTTTTATATACAATAACGAAACTTTAAACAAATATGACGATATAAAACTCAAAAATTGCAACgatattgaatttaaaaaaaggcAGATCATCGAAAATGAGACTACAGTATATAGATGTCACGAATGTATTAATACATTTCAAAAATTCTCTGATTTTAAGTTGCATAAAGCAGAACATTCAATTAAGAAACGAACTTGCACAATTTGCAATCTCCTATGCCGCGGAGTAACAAGGCTCAAAGAACATATGAATATACATAATGGGATAAAACCATTTAAATGTACAAAGTGTAGTAAAGGTTTTACATCAGCTAATCATTTAAAGTGTCATATGGACTCTCATAgggatgaaaataattttaaatgtgagAAATGTGAAAAGACCTTTAAAACTAAAAGGACACTGGCAGGACATATCGATACCCATGCTAAAAgaattaaggattttatatgcAAGATTTGtaatgaagattttaatttaCTAAATGAGTATTGTCGACATCTCACTCAAAAACATGGAGAGGAAGTTCCTAAGccaaaatgtataatttgtgaCAAAATCTTCAAAACTGAAACACTACTGCAAGCTCATTTGAAAGAGCATAAAGATTTAACATTTCCTtgtgaatattgtaataaaattttCACCACAATGTACAAGATAAAACGGCATGTAAAAAGATCTCACGTAATAAATGAGTGTGAATACTGCGACAAGGTGTTTTATGACAAAGCAGAATTTGGCAAGCACAAGAAGGAAGAACATACTACTGAAGaaaaaataaatatttgccaATATTGCCAGAAAGCATATTCCAGTACAAAAAATCTAAAAGAGCACATAAGAGTACAACATACCAATGACGGTGGCAAAAACCAGTGTAATATTTGTGACAAGACATTTATTAATAGGTTTTTGTTAAATAATCATAGCAAGAGTCACGATAAATGTTTCAAATGTCCTTTATGTGATATGCTGTTCTCCAATAGGTACAATTTAGAATTGCATTCAGTAACTCATACTAATGAGAGAAGGTTTGAATGCCCTGTATGTAAAAAATTTTATACCAGCAAAGTAAGTCTGAAAAATCATATTCCAATCCATTCAGAAGAGCGCCCCTTCAAATGTACGCAATGCAACAAGGATTTTAAAAGTTCCAGgaGACTTTATACTCACAAAAAATCACACCTTACCAAATTGGAATTTGAATGTTACAATTgcggaaataaatataaaactaaagaCTATTTGAAATCGCACatgaaaaaacataataaagaaaaaccaTTTGATTGTACTTATTGTAACAAAAGATTCAAGCATAAAAGAACTTTAAATACTCATCTCAATGGTATACataaaaggaaaattaaaaatattgatattaagcATGAATTAGATCCACGAAATTACTCTGAAGAATTGATCATTTTAAAGGAAGAATACAATACACCGATAGACAACAGTTTGGATAATGAGCGTTCTTCTGATTTAGAGGTGGAATCAGTTTATGTGAAATCGGAAGTTGAAGATTACTAA
Protein Sequence: MDNDSSNSIEYFGDALVPKIESEISLIVKEEPLHECFIYNNETLNKYDDIKLKNCNDIEFKKRQIIENETTVYRCHECINTFQKFSDFKLHKAEHSIKKRTCTICNLLCRGVTRLKEHMNIHNGIKPFKCTKCSKGFTSANHLKCHMDSHRDENNFKCEKCEKTFKTKRTLAGHIDTHAKRIKDFICKICNEDFNLLNEYCRHLTQKHGEEVPKPKCIICDKIFKTETLLQAHLKEHKDLTFPCEYCNKIFTTMYKIKRHVKRSHVINECEYCDKVFYDKAEFGKHKKEEHTTEEKINICQYCQKAYSSTKNLKEHIRVQHTNDGGKNQCNICDKTFINRFLLNNHSKSHDKCFKCPLCDMLFSNRYNLELHSVTHTNERRFECPVCKKFYTSKVSLKNHIPIHSEERPFKCTQCNKDFKSSRRLYTHKKSHLTKLEFECYNCGNKYKTKDYLKSHMKKHNKEKPFDCTYCNKRFKHKRTLNTHLNGIHKRKIKNIDIKHELDPRNYSEELIILKEEYNTPIDNSLDNERSSDLEVESVYVKSEVEDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01351970;
90% Identity: iTF_01351970;
80% Identity: iTF_01351970;