Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:561773-605985[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.9 1.5e+02 2.8 2.8 1 19 257 275 257 280 0.91

2 18 2.5e-05 0.0013 18.7 3.3 1 23 290 312 290 312 0.98

3 18 6.6e-05 0.0034 17.4 0.5 3 23 320 340 319 340 0.97

4 18 0.00048 0.025 14.7 5.2 1 23 346 369 346 369 0.96

5 18 3.5e-05 0.0018 18.3 0.4 1 23 377 399 377 399 0.98

6 18 5.4e-05 0.0028 17.7 7.1 1 23 405 427 405 427 0.97

7 18 0.0024 0.12 12.5 3.8 1 23 433 456 433 456 0.97

8 18 0.0096 0.5 10.6 5.8 1 23 470 492 470 492 0.98

9 18 3.8e-05 0.002 18.2 4.9 1 23 498 521 498 521 0.96

10 18 0.066 3.4 8.0 2.1 1 19 724 742 724 747 0.89

11 18 2.7e-05 0.0014 18.6 3.8 1 23 757 779 757 779 0.98

12 18 0.00031 0.016 15.3 1.9 3 23 787 807 786 807 0.96

13 18 0.00017 0.0086 16.2 4.2 1 23 813 836 813 836 0.96

14 18 3e-06 0.00016 21.7 0.6 1 23 844 866 844 866 0.99

15 18 2.7e-05 0.0014 18.6 5.6 1 23 872 894 872 894 0.99

16 18 0.019 0.98 9.7 2.7 1 23 900 923 900 923 0.96

17 18 0.026 1.4 9.2 6.5 1 23 939 961 939 961 0.95

18 18 0.00035 0.018 15.2 7.4 1 23 967 990 967 990 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.9	1.5e+02	2.8	2.8	1	19	257	275	257	280	0.91
2	18	2.5e-05	0.0013	18.7	3.3	1	23	290	312	290	312	0.98
3	18	6.6e-05	0.0034	17.4	0.5	3	23	320	340	319	340	0.97
4	18	0.00048	0.025	14.7	5.2	1	23	346	369	346	369	0.96
5	18	3.5e-05	0.0018	18.3	0.4	1	23	377	399	377	399	0.98
6	18	5.4e-05	0.0028	17.7	7.1	1	23	405	427	405	427	0.97
7	18	0.0024	0.12	12.5	3.8	1	23	433	456	433	456	0.97
8	18	0.0096	0.5	10.6	5.8	1	23	470	492	470	492	0.98
9	18	3.8e-05	0.002	18.2	4.9	1	23	498	521	498	521	0.96
10	18	0.066	3.4	8.0	2.1	1	19	724	742	724	747	0.89
11	18	2.7e-05	0.0014	18.6	3.8	1	23	757	779	757	779	0.98
12	18	0.00031	0.016	15.3	1.9	3	23	787	807	786	807	0.96
13	18	0.00017	0.0086	16.2	4.2	1	23	813	836	813	836	0.96
14	18	3e-06	0.00016	21.7	0.6	1	23	844	866	844	866	0.99
15	18	2.7e-05	0.0014	18.6	5.6	1	23	872	894	872	894	0.99
16	18	0.019	0.98	9.7	2.7	1	23	900	923	900	923	0.96
17	18	0.026	1.4	9.2	6.5	1	23	939	961	939	961	0.95
18	18	0.00035	0.018	15.2	7.4	1	23	967	990	967	990	0.97

Sequence Information

Coding Sequence: ATGCGTTCGGAAAGTGATCCGAATAACTCGATTTTTGCCATATGTTGTGATCCTACTAACCCTCCTAATGAGatcaaaactcaaccttcaccatattgtaaaagGTTACCTCTAATTACCTCTCCAattgacgtgtattgttctataagactcgtcatgggTAGTACCAAATGGCAAAGCTTTTATTTCATATGTGATACATGTACTAATTTACTAAGTCTTGCATATAATTTTCGTGAAACATGTGTGAAATCAGATTGTGTGAGAAGGAAACTTAAAGAAAAAATTGGTACAAGAACTGAcgtttttacatttaacattaaaaattcaaatgtcAATGGTGGTTTTATACCTGaTGATGTTAAAGAGGAAACGTGTAAGgatttttcagaaatattagataatattaatgACACAAGTGATATAGATCAAATCCATGAAGAAAAAAACCATGATgtagataatttatataataaacatGAATTTAAAAGAGGAACCGAAGataatgtttttaaatttaaaaattcagaTGTTAATGGCCAGGACAAAGTGTATTTATCTAAGGAAGGATTAGTGGATAATTTGAAAAGCaatactcttttacaaaatgAAGATAAAGAATCATTAATCAATGAGTATGATTATGAACATGTACACTCCGGTAGTGAAAGTGATGAAGAGGGTAAACCACTCAATGTAGAAATAGAAACTGAGTTTGATTCTTCTGGCAAATCAAACAATTTAAAGAGAAAACAgaataaagttaaatttagttgtgAAAAATGTTCCTTTAAGGTTTCATCAAGTACAAAATTATTAGAACATTGTACAGTAGAACATGAAATGAGACCAAGAGATGTGAAACCATTTGTATGTGATAGATGCCCAATGCGATTCTCTAGTTCTTCAAACTTGTGTCAGCACCTTAAGTACCATGAAGGTATTAAATCTAATATGTGTTCATATTGTGGAACTGGATTTATAACAAAGACTGATTTAATCAATCATGAAAAGAAACATTTAAACAGGCGCGAGTATAAATGTGAATTCTGTGGGAAGAGTTTTAATACTCACAAGCATATTAgGTCCCACAAATTAATTGTCCATACTGACTCATCTTTGTGGAAGTTTGTTTGTGAGGTTTGCAGCAAACCATTTCCAATAAAGTCAAACTATGACAGCCATATGAGAAGGCACACCGGTGACAAAAAGTTTGCTTGTcatttgtgtgaaaaaaaatttacaacCAAATGTGATTTGCAAAGGCATACGAGGAGTCACTCTCACGTTAGAGAATATCATTGTCAACACTGTAATAAACAGTACAAAGATGAGAGAGTTCTTAAGGTGCATATGGCTAAAGTACATGGTTTAGGAAATGTAAAAATCCCAGTAAAGGAGCGGAAGCACACATGTCATTTTTGTCCGAAAGCCTATTATGCAAAAAACAAACTTACAAGACATTTGTACACTCACTCTGGAGAAAAACCTTTTAACTGTCATATTTGTAATAAGAAATTTAACGATAAATCTTATGTTAAACAGCATTTGCGGAACACTCATAATGTAGATACCAACGAGACTTTAGAAAGTGAActtaaaataaactatgttaatATCTCTTCTAAAGCAATATTGTATTTTAAGGTAACTATATTTTACAgttcaacaatttcaaacaaaaataaaaaatataaagagataTCAAGAAAGAATATGTTTAAGACCTGTTGTGCATGtttaactaaaaatacaaaattaaataagcTTTCAGAAATTGTGGAAAATGATATTAGTTTATTATGGAAACTTCAGGCCTGCATATCAGAAATTAACTGGTTGTCAATTTATGAAATATGCATTCCTTGTACagatttattaaatatagtgTATGCTTTCCGTCAAACTTGTATTAAATCAAATCAAATTAGAACAGAAAGACTTGACACTAGACAAGAAGGTAAACTACATGAATATGAAAATGAGATTGAAACTGTTAACGATTTAAGAATTAatGATGTTAAAGATGAAACGTGTGAGGATTTTTCGGAAATATTAGATACTATTAATGACACCAGTGATATAGATCAAAACCATAAAGAAAAAGACTATGATGTAGACGATGTATATAATAATCGTAggtttaaaagaagaagaaaagcaCTAAAATTTGTATGTGAAAAATGTAAAATGATCTTTCGTTCCAGTGTTAAGTTGGTCGATCATTGCATTAAAAAACATGACatgaaaataaaagatatacGACCGTTTACATGTGACAGGTGTCCAAGAACATTTTGCAGCTCTTCAAACTTACTTCAGCATGTGAAATATCATAAAGCAGTTAGATCTAATATGTGCACCTTCTGTGGGAAAGGTTTTATTACGAAAACTGACTTAAATATCCATGAGAAACATCATTTAAATAAAAGAGAATATAAATGCGACGAATGTGGAAAGTGCTTCAATACACACAAGGATATAAGATCACACAAACTAGTTGTACATACTGCGGCAAATAGATGGAAATATCAAtgtgaaatatgtaataaaccATTTCCAATAAAATCAAACTATGACAGTCATATGCGAAGACACACTGGAGTTAGGAAATTCGAATGTCATTTATGCGAAAAGAAATTTATAGATAAATGTGTTTTACAACGTCATATGAGAACACATTCAAATGTTAAAGAACACAGGTGTGTTCATTGTGATAAAGAATATAAAGATCTTAGAGTAATGAAGCTACATATGGCGAAAGTTCACGGCATAGGAGTGAATGAAATTAAGTTACCTTCCAAAGAAAAGAAGCATTTCTGTCATATCTGTTCAAAATCATACTATGCGAAAAATAAGTTAACAAGGCATTTATATAGTCATTCTGGAGAAAAACCATATCACTGCCATTtgtgtaataaaaaatttagtGATAAGTCATATGTGAAACAGCATTTACAAAAAACGCATAATATTAAGAGAGACAATCTGGACAGTACTGATTGTTCGCATAATTTCAATAATGAAATGTTTATGTCGAAATATGAACCACAagcaattaataataaatatatttaa
Protein Sequence: MRSESDPNNSIFAICCDPTNPPNEIKTQPSPYCKRLPLITSPIDVYCSIRLVMGSTKWQSFYFICDTCTNLLSLAYNFRETCVKSDCVRRKLKEKIGTRTDVFTFNIKNSNVNGGFIPDDVKEETCKDFSEILDNINDTSDIDQIHEEKNHDVDNLYNKHEFKRGTEDNVFKFKNSDVNGQDKVYLSKEGLVDNLKSNTLLQNEDKESLINEYDYEHVHSGSESDEEGKPLNVEIETEFDSSGKSNNLKRKQNKVKFSCEKCSFKVSSSTKLLEHCTVEHEMRPRDVKPFVCDRCPMRFSSSSNLCQHLKYHEGIKSNMCSYCGTGFITKTDLINHEKKHLNRREYKCEFCGKSFNTHKHIRSHKLIVHTDSSLWKFVCEVCSKPFPIKSNYDSHMRRHTGDKKFACHLCEKKFTTKCDLQRHTRSHSHVREYHCQHCNKQYKDERVLKVHMAKVHGLGNVKIPVKERKHTCHFCPKAYYAKNKLTRHLYTHSGEKPFNCHICNKKFNDKSYVKQHLRNTHNVDTNETLESELKINYVNISSKAILYFKVTIFYSSTISNKNKKYKEISRKNMFKTCCACLTKNTKLNKLSEIVENDISLLWKLQACISEINWLSIYEICIPCTDLLNIVYAFRQTCIKSNQIRTERLDTRQEGKLHEYENEIETVNDLRINDVKDETCEDFSEILDTINDTSDIDQNHKEKDYDVDDVYNNRRFKRRRKALKFVCEKCKMIFRSSVKLVDHCIKKHDMKIKDIRPFTCDRCPRTFCSSSNLLQHVKYHKAVRSNMCTFCGKGFITKTDLNIHEKHHLNKREYKCDECGKCFNTHKDIRSHKLVVHTAANRWKYQCEICNKPFPIKSNYDSHMRRHTGVRKFECHLCEKKFIDKCVLQRHMRTHSNVKEHRCVHCDKEYKDLRVMKLHMAKVHGIGVNEIKLPSKEKKHFCHICSKSYYAKNKLTRHLYSHSGEKPYHCHLCNKKFSDKSYVKQHLQKTHNIKRDNLDSTDCSHNFNNEMFMSKYEPQAINNKYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -