Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:8171845-8182433[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.006 16.7 0.3 2 20 127 145 127 146 0.95

2 12 7e-06 0.00037 20.5 3.3 1 23 155 177 155 177 0.97

3 12 3e-08 1.6e-06 27.9 1.9 1 23 183 205 183 205 0.99

4 12 2.5e-06 0.00013 21.9 1.2 1 23 211 233 211 233 0.98

5 12 0.00061 0.032 14.4 6.9 1 23 239 261 239 261 0.98

6 12 0.00015 0.0077 16.3 0.5 2 23 278 299 277 299 0.97

7 12 1.6e-05 0.00085 19.3 2.0 1 23 307 329 307 329 0.98

8 12 1e-06 5.4e-05 23.1 4.4 1 23 335 357 335 357 0.98

9 12 9.5e-06 0.0005 20.1 0.3 1 23 363 385 363 385 0.98

10 12 0.00037 0.019 15.1 3.0 1 23 391 413 391 413 0.99

11 12 2.6e-05 0.0013 18.7 1.9 1 23 419 442 419 442 0.97

12 12 0.01 0.54 10.5 0.4 3 23 450 471 448 471 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.006	16.7	0.3	2	20	127	145	127	146	0.95
2	12	7e-06	0.00037	20.5	3.3	1	23	155	177	155	177	0.97
3	12	3e-08	1.6e-06	27.9	1.9	1	23	183	205	183	205	0.99
4	12	2.5e-06	0.00013	21.9	1.2	1	23	211	233	211	233	0.98
5	12	0.00061	0.032	14.4	6.9	1	23	239	261	239	261	0.98
6	12	0.00015	0.0077	16.3	0.5	2	23	278	299	277	299	0.97
7	12	1.6e-05	0.00085	19.3	2.0	1	23	307	329	307	329	0.98
8	12	1e-06	5.4e-05	23.1	4.4	1	23	335	357	335	357	0.98
9	12	9.5e-06	0.0005	20.1	0.3	1	23	363	385	363	385	0.98
10	12	0.00037	0.019	15.1	3.0	1	23	391	413	391	413	0.99
11	12	2.6e-05	0.0013	18.7	1.9	1	23	419	442	419	442	0.97
12	12	0.01	0.54	10.5	0.4	3	23	450	471	448	471	0.96

Sequence Information

Coding Sequence: ATGGCTGGAATACAGATCGAAACGAATCGCACaataaaaatttacaataaTTCCAATTTACTGAAATGTAATCCACCATTAGTTAAAACagaaaaaacagaatatatagAAAATTTAGAGCAAGATACGCCACAATCTATCGTTCTACAGGGTTCACATTTTGAAGCAAATGAAACTGGAAACCAAATGGATCTATCAAAACCAAAGAACTATAATAGTGAGCACTATACTAGTAACGATGAATTTgtaaaagagttttttaaaaattctttctatataaaacaacaaaactaCAATAAACTTAAGGATGAATTTAAACAAGAATTTGAAGATTCTGATGAGGAGGACGAAAACATGTCGTCAAGTGGAGAAGATGCAAAATGCAATGTCTGTCAGAAGACATTTTCAGATGAAGATGAATTGAATCTACACTACAGTTGTAGGAGACTTAGTGAGAAAAAATTCGCATGTTGCAACTGCAATAAAGTTTTTCGAGACAATACCCAGCTAAAAGTTCATGTAAGAAAGCATACAGGAGAGAAACCATATGAATGTCATATATGCGAAAAAAAGTTTACAGTAAatggaaatttaaataaacatatgaGAATACATACAGGAGAGAAACGTTTTGAATGTTTGGTGTGTGGAAAAAAATTTACTCAGTTTGCCCACTTAGAAGATCATCTCCTAACTCACACAgAGGAGAGACCTTATCCTTGCAATGTGTGCCATACTGCGTTCAAAACAAAATCCAGATTGCATCACCATAGCAGAATTCATATGGATAATAATATTATTCCAACGAATATTCCAACGATAAATAGTGTTCGTTGCCCACAATGTACCTTAATGTTCCGGACGTCAAGACAGCTAAAAGGTCATTTAGCTTCGCACGCGTTACAAGCAAATTCCTATTACAAATGCCACTTGTGTGGTAAAGAATTTCCAACGTACATGCTCCTGGTAAAACATGAAAAAAGCCATGACGCTCCTAGAAATTACGAATGTCATCTTTGCGAAAAGGCTTTCACGAATTCTTATCATTTAAGGAGACATGTAGATACCCATGCTGGAATCAGACCCTTTATCTGTAGTGTTTGCAGCCGGCCATTTCCATCAGTACAAAATCTAAGACGTCATCTCATGACACATACTGGAGAAAAACCATTTCGATGTGGTACTTGTATGAGGGCATTCCATACATTGGGAAATCTAAATCGACATACAAGAACACATACAGGCGAAAAACCGTTTCCCTGCACCTACTGTAATAAAAGATTTGCTCATAGtaCAACAGCTAAGGAACATATCAGAATGGTCCATACACACGAAAAGCCGTTTGGTTGTAGTCTGTGCCAAGAGACCTTTTCTATTAGCAAATTACTGTATAGTCACGTGAGGGAGATGCATCCCCAGTTTTTTCCTCAATTCAAAGAGGAGTGTGATTTAACCCCCAATGTAAGGaaactaaaattacatattaaaCGGGAAGCAATGTGCGAGGCGGATTCTTTCATTCCAAATTTGAAAATCAAGATGGAAAAAGATGAGGACACAAATAATTCATTGATTGATCCagttattgaaattaaaaaagagGAATGCGAGGCAAGCTAA
Protein Sequence: MAGIQIETNRTIKIYNNSNLLKCNPPLVKTEKTEYIENLEQDTPQSIVLQGSHFEANETGNQMDLSKPKNYNSEHYTSNDEFVKEFFKNSFYIKQQNYNKLKDEFKQEFEDSDEEDENMSSSGEDAKCNVCQKTFSDEDELNLHYSCRRLSEKKFACCNCNKVFRDNTQLKVHVRKHTGEKPYECHICEKKFTVNGNLNKHMRIHTGEKRFECLVCGKKFTQFAHLEDHLLTHTEERPYPCNVCHTAFKTKSRLHHHSRIHMDNNIIPTNIPTINSVRCPQCTLMFRTSRQLKGHLASHALQANSYYKCHLCGKEFPTYMLLVKHEKSHDAPRNYECHLCEKAFTNSYHLRRHVDTHAGIRPFICSVCSRPFPSVQNLRRHLMTHTGEKPFRCGTCMRAFHTLGNLNRHTRTHTGEKPFPCTYCNKRFAHSTTAKEHIRMVHTHEKPFGCSLCQETFSISKLLYSHVREMHPQFFPQFKEECDLTPNVRKLKLHIKREAMCEADSFIPNLKIKMEKDEDTNNSLIDPVIEIKKEECEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -