Basic Information

Insect: Sitophilus oryzae
Gene Symbol: PRDM13
Assembly: GCA_002938485.2
Location: NW:1728671-1750080[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.8e-06 0.00051 20.0 1.0 2 23 136 157 135 157 0.97

2 16 0.0029 0.15 12.3 3.7 2 23 164 185 164 185 0.97

3 16 0.0011 0.057 13.6 1.8 2 23 193 214 192 214 0.98

4 16 5.1e-06 0.00026 20.9 1.1 1 23 339 361 339 361 0.99

5 16 6e-06 0.00031 20.7 5.1 3 23 369 391 368 391 0.95

6 16 0.0014 0.071 13.3 2.5 2 23 408 430 408 430 0.94

7 16 0.00025 0.013 15.6 3.5 1 23 510 532 510 532 0.96

8 16 0.00069 0.036 14.2 1.5 1 23 538 561 538 561 0.95

9 16 6.5e-06 0.00034 20.6 1.6 1 23 566 588 566 588 0.98

10 16 7.4e-05 0.0038 17.3 1.6 1 23 597 619 597 619 0.98

11 16 2.9e-07 1.5e-05 24.8 1.2 1 23 626 648 626 648 0.97

12 16 1.8e-06 9.3e-05 22.4 1.6 3 23 660 680 658 680 0.96

13 16 7.4e-05 0.0039 17.3 4.3 1 23 686 708 686 708 0.99

14 16 3.5e-05 0.0018 18.3 1.7 1 23 714 736 714 736 0.96

15 16 6.3e-08 3.3e-06 26.9 0.2 1 23 742 764 742 764 0.99

16 16 0.00041 0.022 14.9 0.1 1 22 770 791 770 794 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.8e-06	0.00051	20.0	1.0	2	23	136	157	135	157	0.97
2	16	0.0029	0.15	12.3	3.7	2	23	164	185	164	185	0.97
3	16	0.0011	0.057	13.6	1.8	2	23	193	214	192	214	0.98
4	16	5.1e-06	0.00026	20.9	1.1	1	23	339	361	339	361	0.99
5	16	6e-06	0.00031	20.7	5.1	3	23	369	391	368	391	0.95
6	16	0.0014	0.071	13.3	2.5	2	23	408	430	408	430	0.94
7	16	0.00025	0.013	15.6	3.5	1	23	510	532	510	532	0.96
8	16	0.00069	0.036	14.2	1.5	1	23	538	561	538	561	0.95
9	16	6.5e-06	0.00034	20.6	1.6	1	23	566	588	566	588	0.98
10	16	7.4e-05	0.0038	17.3	1.6	1	23	597	619	597	619	0.98
11	16	2.9e-07	1.5e-05	24.8	1.2	1	23	626	648	626	648	0.97
12	16	1.8e-06	9.3e-05	22.4	1.6	3	23	660	680	658	680	0.96
13	16	7.4e-05	0.0039	17.3	4.3	1	23	686	708	686	708	0.99
14	16	3.5e-05	0.0018	18.3	1.7	1	23	714	736	714	736	0.96
15	16	6.3e-08	3.3e-06	26.9	0.2	1	23	742	764	742	764	0.99
16	16	0.00041	0.022	14.9	0.1	1	22	770	791	770	794	0.91

Sequence Information

Coding Sequence: ATGATTCCTGAAGATATTCAATTTATGATAGACAAAATCTGTCGATCTTGCATGTGTGAAAGTGATGAAATGcaaaatgtatttaagaaaagtGCAGGATCGTCAGAAGAACCAATGCTTCTATCAGATATGCTCATGGCTTGCGCCTCTGTAGAGGTAGCAGAAGGTGATGGTTTACCTTATTTACTTTGCTTAACATGTGAGAACAAACTAAGTACAGCATTTGAATTTAAACAACAGTGTGAGAGATCTGACTCGGCTTTAAGGGAAATTGCAAATCAAGATGGTAAATCAAAAAGAGAAGAAAATATTATTGTGCAACCTGATGTTCATGAAGGCTTATTTGAAGAGGATGAAGATGATTTACCTTTGGCCAAAAGGTTTAAACAAGATGTTACTGAGTTAACTTGTTCATATTGTTTAAAGGTTTTTAGTAATAAAAGAGGATTGCGAATACATATTAGACAACATACTGGTGATGGAATGAGgtACTGTCCATTATGTTCTTCAAAATATACCCGTACAAATCATTTAGTGAGACATATGAAAAAACATGATAAATCAGGACATAAGAAAAAATGTAAGATatgttctgaaaaattttccataacaatggATTTATTTAATCATATGAAAATGCATATAGAGGAGgTGGAAAAGAAACATAAAATAGACCTTGATAGAGATATTATATTAGAAATTAAATCGGAAAAATATGAGACAGTAAGTAATGATCAAAATAACTTGGATGGAGATACACCATGTGAGCAAAATGAATTTACTGAAGaagttataactaaagaggaTGGTGATATTTTTGAACAAAAAGCTATAACAAAGgatGATGATTCTGCAGATCTCCTACCTCTCAGTCAGTTTCCATTCAGTGATGATGACGTTGATAGAGATAATAATGATGTTGAGAATTATTCTTCGGAGAGCAAAAATGATTGTTTTGCTGAACAACCAAAGCGGAAAAGAGGCAGACCAAGAAAGAAGGAACCTACTACTTTATATGAATGTAAGGAATGCAGTAAAGTACTTACTACATACTATGGACTTAGAGTTCATATGAGAAAACACACAGGTGCAGAATTAGCAAGCTGTAACGTAGATCATTGTGATAAATCTTTTACCAAAAAGAGCCATCTTAATAGACATTTACGAGCACACGGTATCTttaatggaaaaaataaattaaagggAGAGAAAAagGTCAGAGAATGTGAATTTTGTGATAGAAAGTTTAAGTATAGAAAAAGTTATGTGCATCACATGCAAGCAGAGCATGGTATGTCTGACATTGAATTTGAACTGGAGAAGGATAATTTAGGAAATACTACAAGCCAAAGTAATGTAAAAAGTGAAGAAGCAAATGATGAGAATAATTGTCAAACAAATGATGAAAATTGTCAAGCAAATGGAGAGGAGCAGCCATTGGATGAAAATTTACCAAAACTAGATGGACTAGAGGAATTTGATGTTACAGTCATTGACGAAATTGATGGAACGTCTAAAAATAAAGTCCATGTATGTCACGTGTGTGAAGCTCAGTTTGCCAGGGCTAATCATCTCACAAGGCACATGACGCTTCATAGATCTGTACTAACTCATAAGTGTGATCGCTGTGATCAGGCCTTTTTCACTGAAGATCTTCTAAAGCAACATATAGAACAACAACATATTAATAAACCGTATGTCTGTACTACGTGTAATAAACCGTTTAGTAGAGGCGAGCATTTGATCCGTCATTTGAAGTTACATGAAGCTCTGACAGATGAAGGCCAACACAAATGTTCGATTTGTGAAACTCTGTTTGcaagGTCTGACCTTTTAGCAAGGCATACGAAAACGCATCTAATGCAAGACAAAAGACACGTTTGCATGGAGTGCGGGAAAGCTTTTAATAGattagataatttaaaaacgcACCAAAGGATACATACAGGATTAAAGGATAATTCAAAACTGCATTTATGTGTATATTGTGGTAAAGAATTTAATAATTCGAGTAATATGaTTGTTCATATGAGGAGACATACAGGAGAAAGGCCGTATAAGTGTAATGTGTGTGGGAAAGGTTTCCCACGATCGCACGACCTTAAATGTCACGAGAGAACTCACTCTGGTGAAAAGCCTTACTTGTGTACTTTGTGCGGCAAGTCTTTCAATAAAAGTAATAAACTGctcagGCACAGTAGAGTTCATACTGGTGAAAGACCGTACGTGTGTAATATTTGCGGTAGGGCGTTTACGCAATCTAACGATTTAGCCTTGCACATGCGCAGACATACGGGAGCTAGGCCTTACGCTTGCGGTGTTTGTCCTGCAAGATTTATCCAATCGGGTCAGTTGAAGAATCATCGCAGAGCCACTGGTCATTGGATGGAGACGCTGCCAGATTTGAAAGGCGGTCACAGAGTGGAACCTGTAACTACTACAGTTGAACCAATGCCCATTAAATTTAAGACGTTCGGAAAGAACCGAGCCGTCAAACTCGAAGACGAAGCGGTGCAAGTACAGCATCTCCTTCAAACGCAAGAAATCGAACAGAGAGTGGATGCGCAGTCGCAACTTTCGCAGTTACAGTCCCAACCTCAAAGAATACTTATGGGCATCATGGGCGACATCAAGATACAAAGCGAGGTCCAACCGTTGATTATCGATTGTAACAAATTAGTCCAAATACCGGGTAGTGCGCTGTCACTCGTAACGCTGCAAGGCGCGAACGGCGAGgaaattaaactaaaaactgAGATAGGTAGTTTCAACTTGGGGCAGGTAAATGACGGCCTGGACAAGCATAAGGTGGTGACGACATCCGACACCTTCGACGAAGGCGATGCGGCAGTCGCGTTTTCTACAGTACAAAGTTCAACGACGTATACCTCAGCGGAAAGTTTTGCGTACCAgacttttaataatatttaa
Protein Sequence: MIPEDIQFMIDKICRSCMCESDEMQNVFKKSAGSSEEPMLLSDMLMACASVEVAEGDGLPYLLCLTCENKLSTAFEFKQQCERSDSALREIANQDGKSKREENIIVQPDVHEGLFEEDEDDLPLAKRFKQDVTELTCSYCLKVFSNKRGLRIHIRQHTGDGMRYCPLCSSKYTRTNHLVRHMKKHDKSGHKKKCKICSEKFSITMDLFNHMKMHIEEVEKKHKIDLDRDIILEIKSEKYETVSNDQNNLDGDTPCEQNEFTEEVITKEDGDIFEQKAITKDDDSADLLPLSQFPFSDDDVDRDNNDVENYSSESKNDCFAEQPKRKRGRPRKKEPTTLYECKECSKVLTTYYGLRVHMRKHTGAELASCNVDHCDKSFTKKSHLNRHLRAHGIFNGKNKLKGEKKVRECEFCDRKFKYRKSYVHHMQAEHGMSDIEFELEKDNLGNTTSQSNVKSEEANDENNCQTNDENCQANGEEQPLDENLPKLDGLEEFDVTVIDEIDGTSKNKVHVCHVCEAQFARANHLTRHMTLHRSVLTHKCDRCDQAFFTEDLLKQHIEQQHINKPYVCTTCNKPFSRGEHLIRHLKLHEALTDEGQHKCSICETLFARSDLLARHTKTHLMQDKRHVCMECGKAFNRLDNLKTHQRIHTGLKDNSKLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCNVCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKNHRRATGHWMETLPDLKGGHRVEPVTTTVEPMPIKFKTFGKNRAVKLEDEAVQVQHLLQTQEIEQRVDAQSQLSQLQSQPQRILMGIMGDIKIQSEVQPLIIDCNKLVQIPGSALSLVTLQGANGEEIKLKTEIGSFNLGQVNDGLDKHKVVTTSDTFDEGDAAVAFSTVQSSTTYTSAESFAYQTFNNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -