Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:356270-409753[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0029 0.15 12.3 4.0 1 23 428 450 428 450 0.98

2 18 5.5e-05 0.0028 17.7 1.8 1 20 456 475 456 478 0.94

3 18 4.5e-05 0.0023 18.0 1.7 1 23 484 506 484 506 0.98

4 18 1.8e-05 0.00096 19.2 3.6 1 21 512 532 512 534 0.94

5 18 6.9e-06 0.00036 20.5 4.6 1 23 540 562 540 562 0.99

6 18 2.6e-05 0.0014 18.7 5.3 1 23 568 590 568 590 0.97

7 18 1.1e-05 0.00057 19.9 7.5 1 23 596 618 596 618 0.97

8 18 1.4e-07 7.5e-06 25.8 1.9 1 23 624 646 624 646 0.98

9 18 7.5e-05 0.0039 17.3 6.7 1 23 652 674 652 674 0.97

10 18 2.9e-05 0.0015 18.6 7.0 1 23 680 702 680 702 0.98

11 18 1.1e-07 5.5e-06 26.2 3.1 1 23 708 730 708 730 0.98

12 18 6.8e-06 0.00035 20.5 7.8 1 23 736 758 736 758 0.98

13 18 5.1e-05 0.0027 17.8 8.2 1 23 764 786 764 786 0.98

14 18 1.8e-05 0.00092 19.2 7.7 1 23 792 814 792 814 0.98

15 18 2.4e-05 0.0012 18.8 6.7 1 23 820 842 820 842 0.97

16 18 4.6e-05 0.0024 17.9 0.7 1 23 848 870 848 870 0.98

17 18 0.092 4.8 7.5 5.0 1 23 880 902 880 902 0.98

18 18 7.3e-07 3.8e-05 23.6 0.9 1 23 908 930 908 930 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0029	0.15	12.3	4.0	1	23	428	450	428	450	0.98
2	18	5.5e-05	0.0028	17.7	1.8	1	20	456	475	456	478	0.94
3	18	4.5e-05	0.0023	18.0	1.7	1	23	484	506	484	506	0.98
4	18	1.8e-05	0.00096	19.2	3.6	1	21	512	532	512	534	0.94
5	18	6.9e-06	0.00036	20.5	4.6	1	23	540	562	540	562	0.99
6	18	2.6e-05	0.0014	18.7	5.3	1	23	568	590	568	590	0.97
7	18	1.1e-05	0.00057	19.9	7.5	1	23	596	618	596	618	0.97
8	18	1.4e-07	7.5e-06	25.8	1.9	1	23	624	646	624	646	0.98
9	18	7.5e-05	0.0039	17.3	6.7	1	23	652	674	652	674	0.97
10	18	2.9e-05	0.0015	18.6	7.0	1	23	680	702	680	702	0.98
11	18	1.1e-07	5.5e-06	26.2	3.1	1	23	708	730	708	730	0.98
12	18	6.8e-06	0.00035	20.5	7.8	1	23	736	758	736	758	0.98
13	18	5.1e-05	0.0027	17.8	8.2	1	23	764	786	764	786	0.98
14	18	1.8e-05	0.00092	19.2	7.7	1	23	792	814	792	814	0.98
15	18	2.4e-05	0.0012	18.8	6.7	1	23	820	842	820	842	0.97
16	18	4.6e-05	0.0024	17.9	0.7	1	23	848	870	848	870	0.98
17	18	0.092	4.8	7.5	5.0	1	23	880	902	880	902	0.98
18	18	7.3e-07	3.8e-05	23.6	0.9	1	23	908	930	908	930	0.98

Sequence Information

Coding Sequence: ATGAATAACGAAAATCCAAACACTATCCAGGGAGCTCACGGCTCGGCAAATAACGATGCATCTTCACAGAGACAACCTCCTACCACCATCCCGACAGATCTTCGTGTGAACACTTTGAACGCAGTGGCGCTTAGCAGTGTTGCCAAATACTGGGTGTTAACCAACCTGTTGCCTGGTCCCATACCTCAAGTGTCAGTTTACGGACTTCCGGGAGCGGGGAGGGATAACCAAGGGAAACTTCCACAAgaCAGTGTTTTGAGTCAGCATGCAGCCGGACTGTTACAGGCCGATCCCCAGATTTTGTTGCAGCAACATGCACAAATTCCTGTCAGCATTTCTCAGGGAGCTATCGGTATTCCTACCGGAGCGATACATCTGGATTCTTCTCATCCCATTCCTCAGCAGCAGTCGCAGTCTCAGCCTGATCACAGCCAAATGAATCGGGAAGTGAGAATTCCAAATTCACAGCCGGGCCATTCTCAGCAGCCCAGCTTGGTCCAGGTCCAAGTAAATCAAGACAATATGGTGTCTGTCATTGACGAGAACAATGACAAGCATCACAAGGAGATGCTGTCGGCTCAGCTGCAGGCCGCCCATCTTCAACTCAACGAATCTCAGATGAATTCTCAGTCGCTGACCGTGCAGCAATTGCAACAGCTTCAAGCTCAGCAAGTCCAACAGGTATGGAATAGTGTGATTCGCATGGAACAATCTTCAATGGAACACAACAATCAGCAGCAGAATCATGGCGATCAGCAACAACAGCAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAACAACAGCAACAGCAACAAAATAACATGAATGATAACATGGAAATTGTTAAGGATGAGAAATCCATACAGTGCAAGTTCCTCAATAACGCACAATTAGGGCTACAGGAAGTGAAGGGCAGTATCATGGACGTGAGAACGGCTGATGGCAGTATAGTGAAAATTCAAACTAATATGCAAGAACAGGAACTGGCTAAAACCTTGGGAGTTGAGATGGTTCAGAATATGTACAAAGTCAATGTAGATGACCTCAATCAACTCTTAGCTTACCACGAAATATTTGGAAAGCTCCAAGGACAAAgCGATGTTTCAAACAATCCAAATCCGAATTTACCTGTTAGTAATGCAGGTAGTAATATAAATATTCCTACCCAGCCCGCTCCAAATTTACCCATAATAACCAAGGATGAACACGAGCCTTCCACCAGTACTATGCAACCACCAAACGAAAACAATACTACGTCAGTCATAACGGGCAATCATCAATGCGATTTGTGCCTAAAGACGTTCCAGTTTCGGTATCAGCTCATAGTGCATAGGCGGTATCATAGTGAGAAGAAACCATTTACCTGCCAGGTTTGTGGAAAAGCCTTTCCAAACAGCCAGGAACTGACCAGGCACGGAAAATGTCACCTGGGTGGAAGCATGTTCACTTGCACTTTGTGCTTTCATGTATTCGCCAACGCTCCGACCTTGGAGAGGCACATGAAAAGGCATTCGACGGAGAAGCCGTACGCTTGCACTACTTGCGGCAAAACTTTTGCCAGAAAAGAGCATTTGGAGAATCACGTCAGGTGCCATACGGGGGAAACCCCGTACCGGTGCAATTTTTGCGGGAAGAATTTTACCAGGAAGGAGCATATGGTTAATCACGTTAGGAAACATACTGGGGAGACACCTCACAGGTGCGAGATCTGCAAAAAGTCCTTTACAAGGAAGGAACACTTTATGAACCACGTCATGTGGCACACAGGAGAAACGCCTCACTGTTGCACAGTGTGCGGCAAGAAATATACCAGAAAAGAGCATTTGGCCAATCACATGAGAAGTCATACAAATGACACACCATTTAGgtgtgaaatttgtGGTAAAGCTTTTACTAGAAAAGAACACTTTACCAACCATATCATGTGGCACACAGGAGAAACCCCTCATCGTTGCGATTTCTGTTCAAAAACGTTCACGAGGAAAGAACATTTGTTGAACCATGTGCGTCAACATACAGGCGAATCTCCACACAagtgtgttttttgtaataagtCCTTCACGCGCAAAGAACATTTAACCAATCACGTACGACAGCATACAGGCGAGACACCATTTAAGTGTACCTACTGTCCCAAAGCGTTTACAAGGAAAGACCATCTGGTCAACCACATAAGGCAGCACACGGGCGAATCTCCACACAAGTGTACTTACTGTACAAAATCGTTTACGCGCAAAGAACATTTGAATAATCACGTGCGGCAACACACCGGGGAATCACCACACAAGTGCCATTTCTGCGCCAAATCCTTCACGAGGAAGGAACACCTCACCAATCACGTTAGAATTCATACAGgtgAATCGCCTCATCGGTGCGAATTCTGCCAAAAAACGTTCACAAGGAAGGAGCATCTGACCAATCATCTCAGGCAACACACCGGGGAAACACCGCACTGCTGTAATGTATGCTCTAAACCATTTACTAGGAAGGAGCATTTACTGATTCACATGCGGTCTCATACGGGGGAAAGACCGTTCACGTGTACGGAATGTGGAAAATCGTTCCCTCTTAAAGGTAACCTTCTTTTCCACCTCCGCTCGCACAACAAAGGCCAGCAAGCTGAACGACCTTTCAGATGCGACCTGTGCGAGAAAGATTTCATGTGCAAGGGCCACCTAGTGTCCCACCGGCGATCCCACGGCGGAGAGAAGCCATACAGCTGTCAGGAGTGCGGCAAATCGTTTGTGGAAAAAGGCAACCTTCTCAGGCACAGCCGCAAACACATATTGGACAGGGAGAAGGCTGAATTGGCTGAGCAGAATATGAATGCACAAAATACTGTCCAGCCGCAACAGCAACAGAACCAAAACAACGCGAACCTGCAGATCGCTCAGGTTCCGGTCAACCCGCCCCCTCAACAGCAACAACAGCCCCCTCCTAGTAACATAGTTCAAAGCGGGCATCTCATGCACACATCCAACCACCATTCTGTCGTAGTGCCTACCAACGGTAACGTTCTAGCGACCTACTAG
Protein Sequence: MNNENPNTIQGAHGSANNDASSQRQPPTTIPTDLRVNTLNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGAGRDNQGKLPQDSVLSQHAAGLLQADPQILLQQHAQIPVSISQGAIGIPTGAIHLDSSHPIPQQQSQSQPDHSQMNREVRIPNSQPGHSQQPSLVQVQVNQDNMVSVIDENNDKHHKEMLSAQLQAAHLQLNESQMNSQSLTVQQLQQLQAQQVQQVWNSVIRMEQSSMEHNNQQQNHGDQQQQQQQQQQQQQQQQQQQQQQQNNMNDNMEIVKDEKSIQCKFLNNAQLGLQEVKGSIMDVRTADGSIVKIQTNMQEQELAKTLGVEMVQNMYKVNVDDLNQLLAYHEIFGKLQGQSDVSNNPNPNLPVSNAGSNINIPTQPAPNLPIITKDEHEPSTSTMQPPNENNTTSVITGNHQCDLCLKTFQFRYQLIVHRRYHSEKKPFTCQVCGKAFPNSQELTRHGKCHLGGSMFTCTLCFHVFANAPTLERHMKRHSTEKPYACTTCGKTFARKEHLENHVRCHTGETPYRCNFCGKNFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHCCTVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCVFCNKSFTRKEHLTNHVRQHTGETPFKCTYCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLNNHVRQHTGESPHKCHFCAKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLLIHMRSHTGERPFTCTECGKSFPLKGNLLFHLRSHNKGQQAERPFRCDLCEKDFMCKGHLVSHRRSHGGEKPYSCQECGKSFVEKGNLLRHSRKHILDREKAELAEQNMNAQNTVQPQQQQNQNNANLQIAQVPVNPPPQQQQQPPPSNIVQSGHLMHTSNHHSVVVPTNGNVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00444375;
90% Identity: -
80% Identity: -