Sory013259.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitophilus oryzae
Gene Symbol
Zfat
Assembly
GCA_002938485.2
Location
NW:2054391-2058238[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.8e-06 0.00015 21.8 4.7 1 23 157 179 157 179 0.98
2 20 1.8e-06 9.4e-05 22.4 3.1 1 23 185 207 185 207 0.98
3 20 3e-05 0.0016 18.5 0.4 1 23 213 235 213 235 0.97
4 20 0.00094 0.049 13.8 4.6 1 23 244 267 244 267 0.97
5 20 0.0003 0.015 15.4 1.5 1 23 294 316 294 316 0.98
6 20 6.2e-05 0.0032 17.5 0.7 1 23 321 343 321 343 0.95
7 20 0.00015 0.0076 16.3 0.6 1 23 349 371 349 371 0.95
8 20 5e-06 0.00026 21.0 0.7 1 23 377 399 377 399 0.98
9 20 1.4e-05 0.00075 19.5 0.4 1 23 405 427 405 427 0.98
10 20 1e-05 0.00053 20.0 2.7 1 23 433 455 433 455 0.98
11 20 8.8e-05 0.0046 17.0 4.1 1 23 630 652 630 652 0.98
12 20 1.1e-05 0.00057 19.9 0.5 1 23 658 680 658 680 0.98
13 20 7.2e-06 0.00037 20.5 0.5 1 23 686 708 686 708 0.97
14 20 1e-06 5.3e-05 23.1 3.6 1 23 717 740 717 740 0.98
15 20 1.4e-05 0.00075 19.5 0.8 1 23 767 789 767 789 0.98
16 20 3.3e-06 0.00017 21.5 0.3 1 23 794 816 794 816 0.95
17 20 0.00041 0.021 15.0 0.6 1 23 822 844 822 844 0.95
18 20 6.2e-05 0.0032 17.5 2.6 1 23 850 872 850 872 0.99
19 20 3.8e-05 0.002 18.2 0.3 1 23 878 900 878 900 0.98
20 20 3.2e-05 0.0017 18.4 1.3 1 23 906 928 906 928 0.98

Sequence Information

Coding Sequence
ATGGATATTGAAACGAAATTCTTGCCAGAATATAAACCAACAGATTTCCAGAAAATCTGTAGGATTTGCGTTTCACCGGAAAACATACAGAGTATTCGTGATGTTAAAATAACTGAGGAAGTTGAGcttttaaatgttttaactGACTTTATCCCGTTAGAGGAATTATCAGATCTAAAATTACCTCAGAATGTTTGCTCTGTGTGCATAACTTTTCTGAAAGAttactataaatttaaaacgaAATGTAGTGAGAGTAAAGAATTTTTAAGAGCATACTTAGAAAATCCGCCAAAGGAACAGGACCAGTCGTCTGGCGATGATAACTGTGTACTTTCAAATGTTAAGATAAGTTATTCTGATGACGATGTTCCACTAGGGTCACCAGAACAGCCAGAGGTCAAgaagaaaaaaagttcaaaattgAAAAAGGAAAGTAAAGCGAAAGAAAAAAGAACTAAAAAGATATATAGCTGTAAATATTGCAATAAAGTATTCAAAAACAAACATAGATTAACGATACACCTTAGAGTGCACACGCAAGAAAAACCCTTTAAATGTGTTGAATGTAATACAACTTTTAGTCATAGTGGTAATTTAAAGAGGCATTATATGATTCATACTGGGGAAAAACCTCATGTTTGTGATACATGTGGCAAAGGTTTTATTCAGGCAATTTCTTTAGAGATGCATTTAAAGAAACATCGCAGAGAAGAGTCTAAAGAGACTTTCAATTGCCATATTTGTTCCCGGACATTTGCTAAAGTCATATATTTTAAACGGCATATGAATAAGTTCCATCCTGATGAAGCAGGGCAAGATACAAGTAAGGAAGAAACGACCGATTCAAAAATCCTAACAAAAGAAGAGAACACTCAATATGAATGTGATAAATGCAGCAGAACATTTCCCCAATTGATATTTCTCAAGCGGCATAAAATACGACACGGAGAAAGAAAGTTTTTGTGTAATGTTTGTGGAAAAGGATTTCTTAGAAAATCAGATCTTCAATCACATACTAAAATTCATACCGGGGAGAAACCACATGTGTGTAATATTTGTAACAAATCATTTGCTCATGTAGCATCCCTAGTAAATCATGGTCTGATTCATTCAGGATATAAGCCTTATAGTTGTCCAATTTGTTCAAGAGCATTTACACAAGTTGCCCATTTAAGAGTTCATGAAAAAACACACTCTGGTGAAAGACCATTTTCCTGTTCATTTTGTGCTAAAACATTTGCTGTAAAAGGCAATTTAACCGTTCATTTGAGAATCCACACTGGCGAAACACCATATGTATGTAGTGTTTGTGAAAAAGGCTTTTGCGATTCTAGCAGTATGAAGAAACATCAGCAGAGTCACTTTAATGTGGTAGATCATAGTCTTAAAAAAGGATCTgagacaaaaacaatcgAAAAAATGGAGatccaaacaaaaatatatccGGAAACTAAACTAGAGGATCTCCAGAAAATTTGTAGAATTTGCGTTACAGTCGATAACGTACACTATATTCAAGATGTTAAATTAGCTGAAGAAGTTGACCTTCTCAATATTTTAATTGACTTTATTCCCTTAGAAGACTTATTAGATCTAAGATTACCTCAGTGTATTTGCTCTGGATGTATAAGCTTCCTAAATGATTACCATCGATTCAAAACCAAATGTAATGAAAGCAAAGAACTTTTAAAAGCATATTTAGACAAAGAACTTAAACATGACCCACAGTCAGATGATGCTTTTTCTCCACTTTCAGATATTAATTCGAATTGTTCTGAAGATGATGTTCCATTAATATTACGAAAAAAGACAGttttcaaaaagaaaaaaagatcgAAACTAAAAAATGGAAGCAAAGCGAGCGGTTTTAAAGACAAAGAAAAGTACTCCTGCAAATATTGCAacaaattatttagttttaaacaCAAATTGGCAATACACCTTAGAGTACACACTAAAGAAAAACCATTTAAATGTGGGGAATGTAATGCTAGTTTCAGTCTTAATGGTAATTTAAGACGACACAAAATGATTCATACTGGAGAAAAACCTCATGTATGTGATACATGTGGTAAAGGTTTTATTCAAGCTACTTCTTTAGAGGTACATCTAAAGAAACATACCATGGCAGATAAAAAAGAGACTTACACATGTCATATTTGTGGCAGAACATTTGCTAGATTCGTATCTTTCAAGCGACACATAAGAAAGCTTCATCCAAAAGAAGCAGAACAAGATCcagaaaaaaatgatgaaattgACTTAAAAATCAATCCTAAAGAAGAGGGCTCTCCATACGAATGTGATAAATGCGACAGAACATTTCCCCAATTGATATTTCTTAAGAGACATCAAATCAGCCACGGAGAaagaaagtttttatgtaatgtTTGTGGAAAAGGATTTATTAGAAAGGCTGATCTTCAATCCCATACTAAGATTCATACAGGTGAAAAACCACATGTATGTAATATTTGTAACAGGTCATTTGCTCACGTAGGATCCCTGGTCACACACGGTCTTGTTCATACTGGTTATAAACCGTACAGTTGCTCTATTTGTATGAGATCATTTACACAAATTTCACATTTAAAGGTTCATGAAAGAACTCACAGTGGTGAAAGGCCATATTCTTGCTCATTTTGTGCCAAAACATTTGCGATAAAAGGCAACTTAACTGTTCATCTTAGAATCCACACAGGGGAAACGCCATATGTATGTAGTGTTTGTGAGAAAGGCTTTTACGATTCAAGCAGTATGAAGAAACATAAACAGAGTCACTTTAATGTAATAGATCATAATATCAAAAAAGGATCTGattaa
Protein Sequence
MDIETKFLPEYKPTDFQKICRICVSPENIQSIRDVKITEEVELLNVLTDFIPLEELSDLKLPQNVCSVCITFLKDYYKFKTKCSESKEFLRAYLENPPKEQDQSSGDDNCVLSNVKISYSDDDVPLGSPEQPEVKKKKSSKLKKESKAKEKRTKKIYSCKYCNKVFKNKHRLTIHLRVHTQEKPFKCVECNTTFSHSGNLKRHYMIHTGEKPHVCDTCGKGFIQAISLEMHLKKHRREESKETFNCHICSRTFAKVIYFKRHMNKFHPDEAGQDTSKEETTDSKILTKEENTQYECDKCSRTFPQLIFLKRHKIRHGERKFLCNVCGKGFLRKSDLQSHTKIHTGEKPHVCNICNKSFAHVASLVNHGLIHSGYKPYSCPICSRAFTQVAHLRVHEKTHSGERPFSCSFCAKTFAVKGNLTVHLRIHTGETPYVCSVCEKGFCDSSSMKKHQQSHFNVVDHSLKKGSETKTIEKMEIQTKIYPETKLEDLQKICRICVTVDNVHYIQDVKLAEEVDLLNILIDFIPLEDLLDLRLPQCICSGCISFLNDYHRFKTKCNESKELLKAYLDKELKHDPQSDDAFSPLSDINSNCSEDDVPLILRKKTVFKKKKRSKLKNGSKASGFKDKEKYSCKYCNKLFSFKHKLAIHLRVHTKEKPFKCGECNASFSLNGNLRRHKMIHTGEKPHVCDTCGKGFIQATSLEVHLKKHTMADKKETYTCHICGRTFARFVSFKRHIRKLHPKEAEQDPEKNDEIDLKINPKEEGSPYECDKCDRTFPQLIFLKRHQISHGERKFLCNVCGKGFIRKADLQSHTKIHTGEKPHVCNICNRSFAHVGSLVTHGLVHTGYKPYSCSICMRSFTQISHLKVHERTHSGERPYSCSFCAKTFAIKGNLTVHLRIHTGETPYVCSVCEKGFYDSSSMKKHKQSHFNVIDHNIKKGSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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