Sory009006.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:947525-949458[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-07 0.00018 20.8 0.1 5 39 1 35 1 40 0.86
Sequence Information
- Coding Sequence
- ATGACAGATGCAGTTACGGCAGTAAGAACAAACCGGTTAAGTTATGAGTCAGCGGCAGCTGTCTACAACGTACCACAAACAACATTATTTCGGCGAGCCAAAAAAGCTGGCGACAGTCAAGAGGCTTCTACCAAGGGATTGGGCAGATTTCGAAGATGTTTTGCTTCCGAGCAGGAGCAAGAACTCGTAAGCCACTGCCTATTTATGGAAAGTAGATATTTTGGATTAAGGATCAAAGATCTGAGATTTTTGGCATACGAGTTTGCCTCTCGTAATAATATTACTCACTGTTTTAATGATGACAAAGGACTGGCTGGGAAAGATTGGGTGCTATCTTTCTTGCAAAGGCACCCAGAGCTTGCGCTTCGTCAACCGGAGAAAACTTCGTTAGCAAGGGCTACTGGATTTAATGCAGTGTCTGTCGGtaaattttttaagatattagatgacttatttaaaaaacataattatacTGCAAGTCAGATATATAATGTAGATGAAACAGGTATATCTACAGTTCCAAATAAGCCATCAAAGATTATTGCCTCAAAAGGAAAGAAGCAAGTAGGCACTCTTTCCTCAGCTGAAAGAGGAACAACGACTACCTCAGTCATTTGCTTTAATGCCGCTGGACGATACATACCTCCTCTCTTAATATTTCCCAGAGCTCGAGAAAACTTGGATCTATTAGAGGGAACCCCACCCGACACCCACCTTGTGTGTCATCCTTCAGGCTGGATGAATTCGGATATATTTTGTCCCACATGGTTCGAACATTTTCTTAAGCACGTTCAACCTACAGCAACGAATCGAGCTCTACTTATTCTAGATGGGCATGCAagccatacaaaaaatattcgtttGATTGAAACAGCTCGAAAAAATCATGTGGACATCTTATGTATTCCCCCCCATACGTCTCATCGACTCCAACCCTTGGACGTATCTTTTATGTTCCCCCTGAGTACCTTTTACTCCCAAGAGTGTGAGCTATGGCTCAGAAATCATCCAGGCAGACAAATAAGCATCAGGCAAATTGGGCTATTATTCGGAAAAGCATACATGAGGGCGGCAACACTTAAGAATGCCGTAAGTGGTTTTGAGAACACTGGGATATGGCCATTTAATCCCAGCATATTCCCTGAAGAGGCATTTGTAGCTAGTGAAACTACTAACAGACCTGAGCCAACGAATCCTCCAGCAAACACTGAAAAAGCTAATACAACAGTAAATAATACAAATGCATCTTACCCTAATGAatctATAAAGGAACATATTGATATTAATTCCTCATCTGACGAAGACGATGTTCCGTTGATGGCACTCAAAAATTTAATTGCCACCAAGTCCGTTACTTCTGAAAAACAGAACTCAAGCTGCAGCAAAAATATAACTGCAGAACCGATCGCTGGTTGCAGTAAGGATATGTTTGCAGGGCCAATAGCTGATTACAGTAAAGATGTACCAAAACCCGTCGCTGATTTCAGCAAAAACATGTTATGCACAGAATTTGTTAGTTCTGAAATAGGAGAAGAAACACCCGAGAATGACGTTGGATTTGAAGTTCCTGAAAGTCCAGTGAAAGAGATTATTACATCCCATAAGGAGTCTGGTAGTTTTTGCAGTCCACAGGAAATAATACCCGTTCCACAATGCAGTCAAAATATTACTGAACACAAACCTCGGCGCACTAGAGGGAAAACTGCCGTGATCACTAGCAGTCCATATTATCTTGAActaaaagagaaaaataaagtcCATCCCTGTTAA
- Protein Sequence
- MTDAVTAVRTNRLSYESAAAVYNVPQTTLFRRAKKAGDSQEASTKGLGRFRRCFASEQEQELVSHCLFMESRYFGLRIKDLRFLAYEFASRNNITHCFNDDKGLAGKDWVLSFLQRHPELALRQPEKTSLARATGFNAVSVGKFFKILDDLFKKHNYTASQIYNVDETGISTVPNKPSKIIASKGKKQVGTLSSAERGTTTTSVICFNAAGRYIPPLLIFPRARENLDLLEGTPPDTHLVCHPSGWMNSDIFCPTWFEHFLKHVQPTATNRALLILDGHASHTKNIRLIETARKNHVDILCIPPHTSHRLQPLDVSFMFPLSTFYSQECELWLRNHPGRQISIRQIGLLFGKAYMRAATLKNAVSGFENTGIWPFNPSIFPEEAFVASETTNRPEPTNPPANTEKANTTVNNTNASYPNESIKEHIDINSSSDEDDVPLMALKNLIATKSVTSEKQNSSCSKNITAEPIAGCSKDMFAGPIADYSKDVPKPVADFSKNMLCTEFVSSEIGEETPENDVGFEVPESPVKEIITSHKESGSFCSPQEIIPVPQCSQNITEHKPRRTRGKTAVITSSPYYLELKEKNKVHPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351611;
- 90% Identity
- iTF_01351611;
- 80% Identity
- -