Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:1656050-1658677[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 9.2e-08 1.9e-05 24.0 0.0 2 43 16 57 15 59 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	9.2e-08	1.9e-05	24.0	0.0	2	43	16	57	15	59	0.87

Sequence Information

Coding Sequence: ATGCCTCGAATATACCAAAGAAAGACAAACAGACGTGCGTGGGATGAAAATGCTATGATTGCGGCTGTGCATGAAGTATTAGATGGAAAATCTTGCAATGGTGTGGCTTCTCTATACGACATCCCAGAACCGACTCTGCGCAGGTatgtgaaaaaaatgaaaaatgatcTGCAACTACCGATGCATGGAGGGAGATATTCTACTACGTTTAATTTAAACCAGAGCCAGGCACTAGTAAATTATATTACCTTGATCGACAAAAGAGGTTTTGGATTGACAGCCATACAACTAAGGAAGTTAGCCTATGACTTTGCTGAAGAACAAGGAATAACACATCGTTTTAACAAGGAACGGAAACTAGCAGGAAAGGATTGGTTATCTAATTTCattaaagataataaaataagTCTAAGAACTGCTGAGGCCACTTCAGTTGCGCGTTTAATGTCTTTTAACAAGCCCGCTGTCCAAAAGTTCTTTGACATTCTACGCGAAGTTCtggaaaaatacaaatttagtCCCGACAGAATCTACAACGCCGACGAAAGTGGCCTGTCGTCTGTTCCGTGCAAACTACCAAAAGTTTTAAGTCCAGTCGGGACTAGAAGAGTAGCTAAAGCTGTTTCGGCCGAACGAGGCAAAAATACTACTGTTGTGTGCGCAGTTAATGCAGTTGGCAACTATGTCCCTCCTTATTTTATATTTGGTCGCATTCGTATGAAGGAAGAATTACTCTATGGTGCTCCAATAGGTTCGGATGGCACTGCACAAAAAAATGGATGGATGTGCACtgaaatttttgttaaatacttacaccatttttccaaatatgctcatTCATCGCCGGAAACCCCTGTTCTTCTTATGGTAGACAATCACTCTTCTCACATATCTTTACCTGCAATCAACTATTGTAGGCAAAAGGGGATAATCATGATTGGATTCCCACCACATACAACACACAGGTTACAACCGCTTGATGTATCATTTTTTGGCCCGCTGAAGTCGTTTTTTAGCCGAGAATGCGACAATCATCTCGTAAATCACCCTGGGCAGCTAATTGGGGACAAACATATTTGTCAGCTATTTGGAAAAGCATATAATAGGGCCGCAACGGTATCAAATGCTGTGAACGGCTTTAAAAAATGCGGTCTTCAACCTTTTGACCCTTTTGTATTTGGCGACGACGATTTTGTAATGGCTGAAACAACTGAAAGGGCACCGCATCAACCACCCGTTTATCAAAATTCCGATAATGAATCTGATGATGATATTCCtctaataaattttgtgaaaccCCAAAAGGATATTGAGAAAAAATCAACAATAAATATGACTTCAAATTCCCCAACAAGTGAAATAGTTTCAAGCACACCTCGTCATTTCGAAAAAGTAACGCAAGTAAAAAGAAATCTGTTTAGGGcggaaaataaagaaaatgagCCAATTCCTGGAACGAGTCAAACCGATAATAAACTGAATGAAGTGACACTTCAAAAAATTCGACCTTTTCCAAAAGCCGAAAGGGGGGGAAATTGTAAAAGGAAGAAGTTGACAGCTAGTGTAATAACCAGTACACCCATTAAAGAACAGTTGGAGGATAAGGAATATCAGATAAGACAAAGAGAAGAAAAGAAAcgaaaaattatagaaaaaaaaagtcaaaaaatcCCTAAGAAGCTAAAAGAATCAACAATTGCTTCCAAAAAAGAGAAAGTAATGCCACTGACCCCTCCCAAGAAAACTAAAGAATCTATTTTCTGCCCTGGTTGTGATGAATTATACCAGGATCCCCCAGTGGAGGACTGGATTAGTTGCAGCAATTGCCAGTATTGGTGGCACGAAGCTTGCAGCAACTACAATGGTGTAAGTGAGTTCGTTTGTGATTACTGCTAA
Protein Sequence: MPRIYQRKTNRRAWDENAMIAAVHEVLDGKSCNGVASLYDIPEPTLRRYVKKMKNDLQLPMHGGRYSTTFNLNQSQALVNYITLIDKRGFGLTAIQLRKLAYDFAEEQGITHRFNKERKLAGKDWLSNFIKDNKISLRTAEATSVARLMSFNKPAVQKFFDILREVLEKYKFSPDRIYNADESGLSSVPCKLPKVLSPVGTRRVAKAVSAERGKNTTVVCAVNAVGNYVPPYFIFGRIRMKEELLYGAPIGSDGTAQKNGWMCTEIFVKYLHHFSKYAHSSPETPVLLMVDNHSSHISLPAINYCRQKGIIMIGFPPHTTHRLQPLDVSFFGPLKSFFSRECDNHLVNHPGQLIGDKHICQLFGKAYNRAATVSNAVNGFKKCGLQPFDPFVFGDDDFVMAETTERAPHQPPVYQNSDNESDDDIPLINFVKPQKDIEKKSTINMTSNSPTSEIVSSTPRHFEKVTQVKRNLFRAENKENEPIPGTSQTDNKLNEVTLQKIRPFPKAERGGNCKRKKLTASVITSTPIKEQLEDKEYQIRQREEKKRKIIEKKSQKIPKKLKESTIASKKEKVMPLTPPKKTKESIFCPGCDELYQDPPVEDWISCSNCQYWWHEACSNYNGVSEFVCDYC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01351621; iTF_01351622; iTF_01351623; iTF_01351624; iTF_01351625; iTF_01351626; iTF_01351627;
90% Identity: iTF_01351621; iTF_01351622; iTF_01351623; iTF_01351624; iTF_01351625; iTF_01351626; iTF_01351627;
80% Identity: iTF_01351621; iTF_01351622; iTF_01351623; iTF_01351624; iTF_01351625; iTF_01351626; iTF_01351627;