Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:2775600-2899010[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.6e-08 9.3e-06 25.0 0.0 7 38 143 174 137 179 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.6e-08	9.3e-06	25.0	0.0	7	38	143	174	137	179	0.89

Sequence Information

Coding Sequence: ATGGATGCTGGGCATCTCCGGACCAATGGCTTCGGCGCACTCTGGCGCGGATCACCGCCCGTCGCCGGTACTCTCGACGGCGCGGTGGTACCCAGAAGAAGATTTAAGGAGGATTTCTCGGTATCAGCCAAGCGGTCTGGCGTGGCCGAGCACGTCGCCGCTGCCTCTGGCGTTGCCAGGCAGTGGCGTTCGTTGCTTGATTGGGGGTTGAGCACAAATGAAGTCCACCAAGAGACAGAAAGTAATGAagaagcaaacgatctagctggTAAAGAAGCGatcactccactaactggaccggAACCGTTCTGCATCCCAAGTGGAAACGatcttaaagcggaactcaagaacctaggACTCCAcctGATGCCGAGAAATTACAAACGAAAGACCAACCGTAGAAAATGGGATGAGGAATCCCGTAGGTTAGCGCTGCAAGCTGTCGAACAAGGTACCTTATCTTGTAATGCGGCAGCTATTAGATACAACATTCCTGAGCCAACGCTGAGGCGATGCCGAAAAAAGCAACTTACAGGAGAAGAACTTCCACATCATGCGGGTCGATTTAATCAAACTTTTACACCTCAACAGACTGCAGAATTTGTTCAATATATCACAGAATGCAATAGCCGTGGCCTTGGAATGACTTCAGTTCAAGTGCGAAAATTAGCTTTTCAATTTGCCGAGGAAAACAAAATACAACACAGATTTAATCGCGAAACCAAAACAGCAGGAGTTGATTGGTTTAACGGAGaggttaaagaaaaatataattttactccTGATCGCATCTATAATGCCGACGAATCCGGTCTATCTACAGTGCCAACGAAACTACCAAAAATTTTAACGCCTAAAGGACAACGTCGAGTAGCCAAAATTGTATCCGCCGAAAGAGGCCGCACAACCACTTTAGTTTGTTCTATGAATGCTGTAGGTTCTTATGTTCCGCCTTATTTCGTATTCGCTCGTCAACGAATGAAACCTGAACTGTTAAATGGCTGCCCACCTGGATCGCAAGCAACGGCACAAAGTTCCGGATGGATGACGGCTGATAGTTTCCTGGCATATCTAAAACATTTTGTTAGATACGCAAAGCCTTCCGTTGATGACCCAGTGTTGTTATTGGTCGACAACCATAGCTCACACATTTCACTTCCAGGGATAAACTTCTGTAGAGAACATGGAATTATTCTGGTGGGATTTCCCCCTCACACAACGCATAAATTACAACCATTAGAGGTTTCTTTTTTCGGCCCCCTAAAAACCTACTACAATCAAGTGTGTGATGCTTTTCTGGTCAATCATCCTGGAGTAGTAATTTCTGACAGAAATATCGGTCCGTTATTTGCCGAAGCTTACTGTAAAGCTGCTACAGTAAGTAATGCTGTAAAAGGGTTTAAAGCATGCGGCATCGAACCATTTAATCCCCTAATTTTCGATGACAAAGATTTTGCTGCTGCAAGAACGACAGAACGCGATAATCCAGACGAAGACTTTGCATCACCATCACCAAGAAAGAGAAAATCCACAACCACTCCTTTAACCATTGACATACAGTCAGATTCTGATGAAGACTTTCCTTTATCTATCctggcaaaaaaaataaaactgaaccAAACACCAATGCAAAACAGTCGTGGATTAATTACAGCTAAGGAATTAGTTGAAGACAAATTAGAAAGCACTAAGCGAAAATTATTTGAAGATAACCAAAAAGCTTTGAAACAAATTAGGCCAATACCCACAGCCGAAAGCGCATCCATAACTCGAAAAAAAATGTCTGCCTCAATTATTAGTAGCACGCCTATCTTCTACTGGACACCAGCGCAGCGGGACGACGAAAAAGGGGTAGAAAACGCAAGAGCTGGAGAGAAGGAAGAAGGAATAGGCAAGGAACTAAAAGAACGAGAGCTCGAAGACGACCTCTGGCTAGATAGAGAGCAATGGCGACTGGGCATCGGAAGACGCCGAAGAGCGTTTTAA
Protein Sequence: MDAGHLRTNGFGALWRGSPPVAGTLDGAVVPRRRFKEDFSVSAKRSGVAEHVAAASGVARQWRSLLDWGLSTNEVHQETESNEEANDLAGKEAITPLTGPEPFCIPSGNDLKAELKNLGLHLMPRNYKRKTNRRKWDEESRRLALQAVEQGTLSCNAAAIRYNIPEPTLRRCRKKQLTGEELPHHAGRFNQTFTPQQTAEFVQYITECNSRGLGMTSVQVRKLAFQFAEENKIQHRFNRETKTAGVDWFNGEVKEKYNFTPDRIYNADESGLSTVPTKLPKILTPKGQRRVAKIVSAERGRTTTLVCSMNAVGSYVPPYFVFARQRMKPELLNGCPPGSQATAQSSGWMTADSFLAYLKHFVRYAKPSVDDPVLLLVDNHSSHISLPGINFCREHGIILVGFPPHTTHKLQPLEVSFFGPLKTYYNQVCDAFLVNHPGVVISDRNIGPLFAEAYCKAATVSNAVKGFKACGIEPFNPLIFDDKDFAAARTTERDNPDEDFASPSPRKRKSTTTPLTIDIQSDSDEDFPLSILAKKIKLNQTPMQNSRGLITAKELVEDKLESTKRKLFEDNQKALKQIRPIPTAESASITRKKMSASIISSTPIFYWTPAQRDDEKGVENARAGEKEEGIGKELKERELEDDLWLDREQWRLGIGRRRRAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -