Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:429795-432196[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.9e-09 3.8e-07 29.4 0.0 3 35 17 49 15 55 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.9e-09	3.8e-07	29.4	0.0	3	35	17	49	15	55	0.92

Sequence Information

Coding Sequence: atggtTAGCAACTATAAAAGAAAAACGAATCGACAGAGCTGGTCCAGCGAATCGATGAAGAATGCCGTTGAAGCCGTGTATAAAAAGGTCATGGGGCTAAGAAAAGCATCAGAAATGTTTAACGTTCCAAAAACCACATTAAAGCGGAAGGTCGACATGTATACGAGATCTCAGAACCTCGACGGTGCGATTTCGAAGAAAATGGGTAGATTTGAACCTATATTTAGCAAAGACCAAGAAAAGGAGTTGGgtgactatgtcaaaaacatGGAATCACGCTTTTTTGGGTTAACGACCAAAGACTTACGGTCCTTGGCTTATGATCTCGCCGAAGCAAATAAGATTCCGCACAATTTTGATACCACAACTAAAATGGCTGGAAGATattggttagaaaatttttTGGCTAGAAATTCTGATCTGAGCCTACGGAGACCAGAGGCTACTTCTGCAGCCAGGGCTAGTGGCTTCAATCCAACGGCAGTAAAGCAGTTCTTCACTTTACTAATAGAAGTTATAGATAAATATCAGCTCAAACCCGAAAATATATTCAACGTCGATGAAACCGGTATTACGACGGTTCCTAAAAGTTTGCCAAAAATTATAGGCAAAAAAGGAAAAAAGCAAGTTGGATTGTTAACCTCTGCGGAAAGGGGCCAGCTGGTCACTactgttttttgttttggtgcCGATGGATCTTACATGCCCCCAATGTTTGTGTTTCCACGAAAACGGATGAAACCAGAACTAATGAATAATGCACCCAGAGGCTCTTTTGCCGAGTGTCATGAAAGTGGCTGGATTCAAAAAGACATTTTTACCAAATGGTTCGAGAAGTTTGTAAGATTCTCAAGAGCTACCAAGGATAACCCAGTTTTACTGCTCCTAGATGGACATGCGAGCCACACGAAAAACTTGGATCTCATACGTTTAGCTCGTGATAATGGTGTGCACATACTATCATTTCCTCCCCACTGCACACATAGATTGCAGCCCCTTGATGTGGCTTTCATGAAGCCATTGTCTGCATATTATTCAGATGCTGCAAAACAATGGTTACGATCTAATCCTGGCAGAACCATAACGCAATTTCAAATTGCAGAATTGGTGGGTGAGGCATTTGTAAAAGCCGCCACTCTCCCCACTGCTTACAACGCATTTCGAGCAACTGGGATATGGCCACCAGATCCAAATATTTTCACAGAAGCGGACTTCTTAGCAGCAGATACCACCAACATTGATCAATCAACTGATGATCCACCAAGTTTGCCACCAGATTTTGCCGAAACCAGTAGTCATACCCAGCCAGGTTGTTCGAAGTATTTGCCTGGTAAAGAACCAACATCAATTTTAGTTCAAAATGAGAGCGACGATTCTGATGAAGATGTTCCACTGGCACAAATTGCTATGCGTAAATCGTCAACAAATTTAATTCGAAATGAGGGTGATTCTGATGAAGATGACCTAGTGGCAGCAGAAACCATTAATGATCGTCCGTTAAGTTTGTTGTCGGCTAATACCGAAACCAATGCCACTAAAGTCGATCCTCAGCCATCTCGGACTGGTAATTTAATTCAATCAATAGActccttaaataaaaatagctttttGGTATCACCTGAACTAATTTTGCCCGTACCACGGacaaaacaaattaagagaacTACACGGAAGAGAGGTAAAACCACAATTATTACTTCGTCGCCATACCAAAAAGAGCTGGAAACCGCACAAGTTAATGCAAATCAAGTTAAAAGGAAAGTTACTTTTGGTGATTCTGCTGGGGTGAAGAATAAAAAGAAAGTAAGAAAGGATGCAAAGAAGGAAGTAGCAAAAGAAGTATCGGAGTCAAAACGTCACGTACAGATATCATCTGATGAGGACAAAGATGCGCAGTGTTTGTACtgccaatatttttattctgaatCTACAGAAAGTTGGATTCGGTGTTCAGTTTGTGAATTATGGGCACACTATTCATGCGCTGGTATAGACAGTACTGACATTGAAACTGATTTTGTGTGCGAAAACTGTCAGTAA
Protein Sequence: MVSNYKRKTNRQSWSSESMKNAVEAVYKKVMGLRKASEMFNVPKTTLKRKVDMYTRSQNLDGAISKKMGRFEPIFSKDQEKELGDYVKNMESRFFGLTTKDLRSLAYDLAEANKIPHNFDTTTKMAGRYWLENFLARNSDLSLRRPEATSAARASGFNPTAVKQFFTLLIEVIDKYQLKPENIFNVDETGITTVPKSLPKIIGKKGKKQVGLLTSAERGQLVTTVFCFGADGSYMPPMFVFPRKRMKPELMNNAPRGSFAECHESGWIQKDIFTKWFEKFVRFSRATKDNPVLLLLDGHASHTKNLDLIRLARDNGVHILSFPPHCTHRLQPLDVAFMKPLSAYYSDAAKQWLRSNPGRTITQFQIAELVGEAFVKAATLPTAYNAFRATGIWPPDPNIFTEADFLAADTTNIDQSTDDPPSLPPDFAETSSHTQPGCSKYLPGKEPTSILVQNESDDSDEDVPLAQIAMRKSSTNLIRNEGDSDEDDLVAAETINDRPLSLLSANTETNATKVDPQPSRTGNLIQSIDSLNKNSFLVSPELILPVPRTKQIKRTTRKRGKTTIITSSPYQKELETAQVNANQVKRKVTFGDSAGVKNKKKVRKDAKKEVAKEVSESKRHVQISSDEDKDAQCLYCQYFYSESTESWIRCSVCELWAHYSCAGIDSTDIETDFVCENCQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -