Sory002179.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:2881304-2881945[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-09 1e-06 28.0 0.0 5 39 1 35 1 40 0.90 2 2 0.94 1.9e+02 1.5 0.0 18 28 78 88 77 90 0.94
Sequence Information
- Coding Sequence
- ATGACAAATGCTTTATCGGACGTTAGAAGCGGAATGTCATATAGGGCTGCGTGTCTAAAACATGGGATTCCCCGAATAACACTTATGCGGAAACATAAGAGAAACTTACCTGCTAAAACTAAAATGGGCCCTAAAACATCATTTAGTGAAGAGCAAGAGAATATGTTAGCTTACTGGATTCTTACTATGTCAAAAGCTGGTTTTCCTCTTTCCAAAGAAACCTTTATGTATAGCGTTAAAAAACTGGCAACTGAATATAACATTAAGTTTGGCGGGAAAACAACTCCAGGTAGAAAatggtataatttattttgtgcaAGACATCCAAATATTTCCCTAAGAACAAGTCAAAATTTAACTACAAGTAGACGTTTAGTATCAGAGGCAGAAATATCAAACTGGTTTCAGGAAGTAAAAAGTTATATTGATCAAAATAAACTAACCACTATTTTAGACAACCCGAGGCGGGTCTTTAATACTGACGAGACTGCTTTCTTTTTAAATCCTAAACCAAGTAAAGTACTAGCTCAAAAAGGaagtaaaaatatctatacttcAGCAGGAACTGATGAGAAGGAAAACATTACAGTGCTGCTCACTGCTATTGCAGCTGGTCAGTTAGCACCACCTATGATAGTTTAG
- Protein Sequence
- MTNALSDVRSGMSYRAACLKHGIPRITLMRKHKRNLPAKTKMGPKTSFSEEQENMLAYWILTMSKAGFPLSKETFMYSVKKLATEYNIKFGGKTTPGRKWYNLFCARHPNISLRTSQNLTTSRRLVSEAEISNWFQEVKSYIDQNKLTTILDNPRRVFNTDETAFFLNPKPSKVLAQKGSKNIYTSAGTDEKENITVLLTAIAAGQLAPPMIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -