Sory011064.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:2120779-2122692[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-11 1.9e-08 33.6 0.0 1 41 17 58 17 61 0.86
Sequence Information
- Coding Sequence
- atgCCAACTAACTATAGACGAAAAGGAAATTGTTCCAGGGCAGCATGGAccgaagaaatgttaaaaatggcAATGCTGGCTGTGCGGTCAGGAAATATGGGAGTGAATCAGGCATCCAGGGAATTTAAGGTTCCTTGCACGACACTTCGTAGAAGACTGGTCAGAGGTGATACTAAAAAGAAAGGTCTGGGCCCGCCATCTGTTCTAGGATTAGAAAATGAGAGGAAAATAGtatttcatattaaaaaattacaaaaacgaGGGTTCTCCCCAACGAGGAAAATTGTTTGTCATATGGCATACCACCTTGCTGAAAAGCTTCAAATTAAACATACCTTCAATAAAGAAAGTAAATTGGCCGGAGATGATTGGCTTAGATCATTTTTGCGGCGGAATTCCGACTTATCTGTAAAAAAGTCAGAAGGTGTATCTCTTGCTCGTGCTCGGGGAATGAACAAAAAAGATGTGGACGCCTATTTTGATTTGCTAGGAAAGACTTTGGAAGAACATAGTCTCTTCGATAAGCCCGGCAATGTATTTAACATGGACGAGACCGGGCTTCAACTGAATAATAGACCTGAACATGTTATTGCTGAAAAAGGGTCCAAGAACATAGCTGCAATAACATCCGGTGAAAAAGGTGTAACAATAACTGTAATCTGTTGTTGTAACGGAGAAGGGACATTTATACCACCAGCTTGCATATTTAAgggcaaaaacaaaaaaaaagaatacgaAGACGAGATGCCCCCTGGATCCGTTGTTTATATGTCTCGAAAATCAGCATACATTAATACATCCATCTTTCTAACATGA
- Protein Sequence
- MPTNYRRKGNCSRAAWTEEMLKMAMLAVRSGNMGVNQASREFKVPCTTLRRRLVRGDTKKKGLGPPSVLGLENERKIVFHIKKLQKRGFSPTRKIVCHMAYHLAEKLQIKHTFNKESKLAGDDWLRSFLRRNSDLSVKKSEGVSLARARGMNKKDVDAYFDLLGKTLEEHSLFDKPGNVFNMDETGLQLNNRPEHVIAEKGSKNIAAITSGEKGVTITVICCCNGEGTFIPPACIFKGKNKKKEYEDEMPPGSVVYMSRKSAYINTSIFLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -