Smos010786.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- stc
- Assembly
- GCA_009176505.1
- Location
- VUAH01000002.1:8172936-8177479[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.16 1.6e+03 -0.6 0.3 4 10 444 450 443 452 0.93 2 14 4.9e-05 0.48 10.6 18.6 1 19 456 473 446 473 0.88 3 14 1.5e-07 0.0015 18.6 9.3 1 18 509 526 509 527 0.97 4 14 2.8e-07 0.0028 17.8 10.8 1 18 567 584 567 585 0.94 5 14 9e-07 0.0087 16.2 13.2 4 18 633 647 626 648 0.85 6 14 2 1.9e+04 -4.6 2.0 5 10 677 682 677 682 0.91 7 14 0.043 4.2e+02 1.2 9.1 1 11 688 698 688 699 0.94 8 14 0.9 8.8e+03 -3.0 0.8 4 10 703 709 702 709 0.86 9 14 7.8e-10 7.6e-06 26.0 12.3 1 18 715 732 715 733 0.97 10 14 1.4 1.4e+04 -3.6 0.6 6 10 762 766 761 767 0.68 11 14 0.49 4.7e+03 -2.2 8.2 10 18 780 789 769 790 0.87 12 14 2.3e-08 0.00023 21.2 8.3 1 16 826 841 826 848 0.90 13 14 0.29 2.8e+03 -1.4 10.3 4 17 860 876 858 878 0.79 14 14 0.57 5.6e+03 -2.4 0.2 8 12 894 898 893 898 0.80
Sequence Information
- Coding Sequence
- ATGGCAAATTTTAACAATAACGATCGCAACAAAGGTGGTTATTTCGATCAATACGTGAATTTTGATCAGTTTCTCATGCAACACAACATCAACAATTGGTCACCGTTGCGtggccaacaacaacaacaacaatctaGCCATGGATTCCAAAGTCCCAGCTCATACAATAGCAACACATCGTTTCATCagcaaaacaatttgaatacCCCATTCCATTTTCAACCTCACACCGAATCACCTACCGGCGGTGGATTTCGGCCGCCTTTAGATTGGTTACAAAGTTCAAATTTAACAGCGACCGCATCCGAATTCGTACCACAAACGTCACACCACAGTACGATGCCCAGTTCAACGTTACTTGCGACGGCCAGCGAATTTGTGCCACGCACACAACCCATTTTTGATAAATCTCCCACAAGCGAAAGCAAGCAATCGAACACTGTCTCATGTGATATGGATAAAAATGACAGGATAGCAGCTAAGGTTACTACAACAACTGATGAAAACGCATCAAAAACTGATTCCGTGATAGAAGCTTTAAGTAATACACACATTTCCGATGGCAATAAAGGTACGTCGAAACCGTTGAACAGTAGCGGTGGAGCCATTAAAAAGGTCCGCAGTCAGGATTATCGCAACGATTCAAGAGATCGACATTCAAACGGCAACCTATATACCAGTAAACGTCAGGAACGATACGATGATTATCGTCGAcgtaaaaacgaaaattcacgTCAAAATAGTGGCCGAGCCACGAAATACGACAGCAATCGGAACTACaggggaaaaaatgagaattacGAAGAGGATTCGATTCGCCATAAAGAAGATTCACCCACGAATCACAAAAAACGGAATCGCTACAACAATAAAGGCAGCAACAATCATTTGAACGAGAAACCGAGCAATGGTAATAGTACGACGAACGGTGAGGTAGACAATGGCTCCAAAtccaatacaaacaaaaagaacgaaaagTTTGAACCGAAAGATCGCAAACGACACGATGGGAAACCGAATCGGAATGGTGTTAAAATTGATTCGGTGAATTGTTCGCAGCGTGAAAAATTGAGTCGAGAAATCGATGCTGGTCGACTCGAATGTTTGGTATGCTATGATATGATCAAGCCATTCAGTTCAGTATGGTCTTGTTTGAATTGCTATCATATAATGCACTTGAACTGCATCATGAAATGGGCAGAGTCTTCCAAATCTGAAGAAGGATGGCGATGCTGCGCGTGCCAGAACATCACCAAGTCTTTACCTCGCGAATATTTCTGCTTCTGTGGCAAAGTGAAAAATCCACAGTACAATCGGAATGATATGGCCCATAGCTGTGGCGATGTTTGCGGTCGAGCCGAAAACTGTTCGCACCCATGCACACAGCTATGTCACCCTGGTCCATGTCCACTGTGTCAGGTGATGGTAACGCGTAAATGTTGCTGTggtaaaacatcaaaaatgtaCCAATGCAATCAAAAGGTGGAATTCAAGTGTGATCAACAATGCGGAAAAGATCTGAATTGTTCGGTACACAAATGTGAAAAGTCATGTCACGCAGGCAACTGCGACGATTGTGCGGAAGAGATTGAGCAGACTTGCTATTGTAAGGGTGAAAAGCGTACGGTTCCATGCACAAAAGAGAATAAAGAATCTCTGAACTATTCGTGTGGCCAAGTATGTGACAAGCAGCTAAAATGCAACAATCACAAGTGCAAAGAGTTGTGTCATGCCGGCGAGTGTAATGATTGCGAGCTACTGCCAGATGTTGTTAAAACGTGCCCATGCGGAAAATCCCAAATTGATAAGGAGCAACGAACCAGTTGTATGGATCCAATCCCATTGTGCACATCCACTTGCAAAAAACGATTGACTTGCGGTCAGCCCAATAATCCGCACACATGCATTAGCAAATGCCATTTTGGTCCATGTCCACCATGCAATAAACAAACGGCAGTGAAATGTCGATGCGGCCATATGGATCAAATGATCAAATGTGCACAGCTGTCCACCAGAGCCGATGATGCTCGGTGCaagaaaaaatgcaccaaGAAACGAAATTGCGGCAAACATAAATGCAATACCGAATGCTGCATTGATATCGATCATGAATGCCCAATGAAATGCACGTACACGTTATCCTGCGGCAAACATAAGTGTGAATCAACTTGTCATAAGGGTCGCTGTTTGCCCTGCTATCGAAGCTCATTCGATGAATTATACTGTGAATGTGGTGCAAATGTTATTTACCCACCGGTTCCATGTGGTACTAAACGACCGGCTTGCGATAAACCCTGCTCGCGACAACACGCATGTGATCATGAAATCACACATAACTGTCATTCAGCACAAAGTTGCCCACCGTGCATGGCCTTTACAAAGAAATTTTGCCACGGTCGTCATGAACAACGAAACATAATCCCATGTAGCCAAAAGGATTTCAGCTGCGGTCTCCCATGCAACAAACCATTGAAATGTGGTCGCCACAAATGCATTAAAATCTGTCATGCTGGCTCATGCGAAACAGACACTGatgtttgcaaacaaaactgCACCAAGCAACGTGTGATGTGTCCACACGCCTGCAATGCACCATGTCACTTGAACACACCGTGCCCAGACACTGCCTGCCGTGAGAACATCGAAGTCTCCTGCCAATGTGGTCTTCGCAAGCAACCCCGCACATGTCATGAATTCTCATCGGATTTCCGTAAAATTGCTACCGCACAGCTGGCATCTAGCATGGTACAAATGCAAAATGGTGGAACCATTGAACTGAGCGATGTTTTGGGACCGATCAAAATGACCAATAACAAAACGTTGGAATGCAACGAAGATTGTCGTATGGCTGAACGAAATCGACGTTTAGCAATCGGTTTACAAATTAGGAATCCCGATCTGCCATCGAAACTGCAACCCAAATACTCGGAATTCGTTCGTGTTTGGGCGAAAAAAGATCCAAAATTGGTTACAATGATTCATGATGAGCTCACCAAACTGGTGAAACTAGCaaaagaaagcaaacaaaagtCTCGAAGCTACTCATTTCCAACGATGAATCGCGAAAAACGTCAACTCGTCCATGAGATGTGCGAAATGTTTGGTGTCGAAAGCAAGGCATATGATGCAGAACCCAATCGCAATGTAGTTGCGAGTGCAACACGTGTCACATCATGGTTACCGGCAATGAGCGTGATGGAAACGGTCGAACGAGAAAATGGACAGCGTCGTGTACCAGTGCCCAACATGAATGCATGGGGAATCAAACGCTAG
- Protein Sequence
- MANFNNNDRNKGGYFDQYVNFDQFLMQHNINNWSPLRGQQQQQQSSHGFQSPSSYNSNTSFHQQNNLNTPFHFQPHTESPTGGGFRPPLDWLQSSNLTATASEFVPQTSHHSTMPSSTLLATASEFVPRTQPIFDKSPTSESKQSNTVSCDMDKNDRIAAKVTTTTDENASKTDSVIEALSNTHISDGNKGTSKPLNSSGGAIKKVRSQDYRNDSRDRHSNGNLYTSKRQERYDDYRRRKNENSRQNSGRATKYDSNRNYRGKNENYEEDSIRHKEDSPTNHKKRNRYNNKGSNNHLNEKPSNGNSTTNGEVDNGSKSNTNKKNEKFEPKDRKRHDGKPNRNGVKIDSVNCSQREKLSREIDAGRLECLVCYDMIKPFSSVWSCLNCYHIMHLNCIMKWAESSKSEEGWRCCACQNITKSLPREYFCFCGKVKNPQYNRNDMAHSCGDVCGRAENCSHPCTQLCHPGPCPLCQVMVTRKCCCGKTSKMYQCNQKVEFKCDQQCGKDLNCSVHKCEKSCHAGNCDDCAEEIEQTCYCKGEKRTVPCTKENKESLNYSCGQVCDKQLKCNNHKCKELCHAGECNDCELLPDVVKTCPCGKSQIDKEQRTSCMDPIPLCTSTCKKRLTCGQPNNPHTCISKCHFGPCPPCNKQTAVKCRCGHMDQMIKCAQLSTRADDARCKKKCTKKRNCGKHKCNTECCIDIDHECPMKCTYTLSCGKHKCESTCHKGRCLPCYRSSFDELYCECGANVIYPPVPCGTKRPACDKPCSRQHACDHEITHNCHSAQSCPPCMAFTKKFCHGRHEQRNIIPCSQKDFSCGLPCNKPLKCGRHKCIKICHAGSCETDTDVCKQNCTKQRVMCPHACNAPCHLNTPCPDTACRENIEVSCQCGLRKQPRTCHEFSSDFRKIATAQLASSMVQMQNGGTIELSDVLGPIKMTNNKTLECNEDCRMAERNRRLAIGLQIRNPDLPSKLQPKYSEFVRVWAKKDPKLVTMIHDELTKLVKLAKESKQKSRSYSFPTMNREKRQLVHEMCEMFGVESKAYDAEPNRNVVASATRVTSWLPAMSVMETVERENGQRRVPVPNMNAWGIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -