Smos007519.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- ZFY
- Assembly
- GCA_009176505.1
- Location
- VUAH01000001.1:21984515-21987949[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.023 1.3 9.7 4.2 1 23 198 223 198 223 0.95 2 15 2.3 1.4e+02 3.4 0.4 1 19 229 247 229 250 0.85 3 15 0.82 49 4.8 7.0 1 23 288 310 288 310 0.93 4 15 0.0017 0.1 13.2 0.3 1 19 316 334 316 337 0.95 5 15 2.8 1.7e+02 3.1 4.8 1 23 344 368 344 368 0.79 6 15 8.2e-05 0.0049 17.4 1.6 1 23 374 396 374 396 0.99 7 15 0.037 2.2 9.0 0.9 1 21 402 422 402 423 0.94 8 15 9.3 5.6e+02 1.5 0.9 1 8 429 436 429 439 0.88 9 15 0.00036 0.021 15.3 1.0 1 23 460 483 460 483 0.94 10 15 0.02 1.2 9.9 1.5 2 23 517 539 516 539 0.95 11 15 0.0049 0.29 11.8 1.7 1 23 545 567 545 567 0.98 12 15 0.076 4.6 8.0 2.5 2 20 574 592 573 594 0.90 13 15 0.16 9.4 7.0 0.7 1 12 628 639 628 651 0.81 14 15 0.048 2.9 8.6 0.5 1 21 657 677 657 678 0.96 15 15 0.045 2.7 8.7 0.0 1 21 692 712 692 713 0.95
Sequence Information
- Coding Sequence
- atgtcgaaaaaacgGCGTCGAGTGCATATTGAAGAGGAATTACCGCTGCATGCCATGGACGAGTATGTGGATGAGGcaatacaaattaaaatggaacCAATCGACAATGGCTATGAACACGAGTCGATGGAGTTTATTCCAACCAAAACTGTCGTATACACCGAAAATGATGGAAATAGGGCAGCCATTGAAGCCGAAATCGGTTTGGAATCACAGTTAGAGTTCATTAAAAGTGAAGTTGATGTGGACGATGTAACCATGATGGAATTCCGTGAAGAGATGAGACGAATTTCATACGATACGACCAATGACTTAATAAACCAAAAGCAACCAACCaagaagagaaagagggaaGTGGAACAAAAGAGCAAGGATAAAAAGAAAGCAACGAAAGTCACGAAGAAggtggaaaaaaaggagaaaaccACGGGAGTCACCAATAAAAAGTCTGAAAATGTTGAACTGCAGCCATTGGAAATTGTGgtaaataaagtgaaaatggccaaatgtcgcttttgtgattttcaatCAACGTCAAGAAATCGATCTATTGTCAAAGAGCACATGAGACTACATACTGGTGTCACCCCATATGCGTGCACCCACCGGACTTGTTCACAAAAGTTTATCACTCGCAATTTGCTTGTGCATCACATGCAACGCGATCATCCAACGAAGAAAAGATATAAATGCCCATTGTGTCGCATGTGGTTTTTCAGCAAGAAAGACATTGAATCacatgaattgaaatgtgtgaaaCGGCGCAGCTTCGAATGCCACTTGTGTAAACACCAAATGAAACGGTTGTACATGTACAAGGTGACGGAGCATATGAGAAAGGAGCACACAGGTGAAAAGGTATTCCAGTGCGAGCATTGCGACGAAACGTTTCTAACCAAAGGCAGCCTCAGGTGTCACGAAAAACATCATCCAGGCGTTGTACCATTCAAATGTTCCATTTGCAATGGCAGATTTGTAACGGAGGAAACGTTGCAGAAACACGAAAGCTATTGCCTCACTCGACGTCGCTTCGAGTGTCATATATGCCAATACACGTATGCAAAATTGAGTTTCGAAGGATTGAGTATGCATATGCGAAAACATACGGGAGAGAAGCCGTTCCAATGTCAATTTTGTGCCAAATTTTTCCCAAGAAGCGAAGCGTTAGCCCATCATATTCAACGGCATCGTGATTTGTTCAACTTTAAATGCGCCCAGTGCCATCGACGATTATTCAGCGCTGAAGACTTGACACAACACGAGAATAAATGCCGCAAACGACGGTATGAGTGCCATCTGTGTGGTTTTACAAAGTTTGGCCTCAGTTACAACAAATTTCATCGGCATTTCGCATTGAAACACGTTGGAGAAAAGTATTATCAATGCATGAGTTGttcgaaaagtttttcgtCAACAAAACTTTTAGCGCGTCACCTCACAGAAGACCATCCTAAGTTGCTCGCACTCATCTGTCCAAATTGTAATCGTCGACACACCAGCAGAGCCGCCAGAGATTTGCATCAAGCAACATGTATGAAACGTCGAATTGAGTGCtacatttgcaaaatgacTTGCAGAGATGTGAAGTCATTGCGTGGTCATATGGTGACCAAACACACCGGAGAAGCAAAGTTCCAGTGCCACCTTTGCCCGAAAAAGTATTTGGTAGAAGCAAACTTTAAAATTCACATCAAGTCTCACACCAAAATTGGACTGTTGAAATGTGATTACTGCAGCAAGGAGTTTTCGCACATCAAGTACAAGAAGAAGCACGagttaaaatgcaaaaaagtcTACGAATGCTGCCTATGCAAAGAAATATTCCCATCGTTTGCTATTTTACAAGGAACTCATATGAGGACACATCTCGGTGCGAAACCATACAAATGCACACTGTGCAGCAAACGATTTGCCTCAATTCGGACTCATAATTTGCATGTCATCGGAACACATTTGCATCAGTACAAATTCAAGTGTAACGCTTGCAATGAAACCATTCGCCAGAACAAAGACGTTTTAAAACACCAGAAATCATGCTTGAAACCTATCCGTCAAGCCGTCGGCATAATCTACTTCAAGTGCTCACTGTGTGGATTGGGACTGGCTCGTGTACCGGAACTACGTCAACACATCCTGAACTCTGAATGCATCAAACATCCGAAGAAAATTCGCAACAAATAA
- Protein Sequence
- MSKKRRRVHIEEELPLHAMDEYVDEAIQIKMEPIDNGYEHESMEFIPTKTVVYTENDGNRAAIEAEIGLESQLEFIKSEVDVDDVTMMEFREEMRRISYDTTNDLINQKQPTKKRKREVEQKSKDKKKATKVTKKVEKKEKTTGVTNKKSENVELQPLEIVVNKVKMAKCRFCDFQSTSRNRSIVKEHMRLHTGVTPYACTHRTCSQKFITRNLLVHHMQRDHPTKKRYKCPLCRMWFFSKKDIESHELKCVKRRSFECHLCKHQMKRLYMYKVTEHMRKEHTGEKVFQCEHCDETFLTKGSLRCHEKHHPGVVPFKCSICNGRFVTEETLQKHESYCLTRRRFECHICQYTYAKLSFEGLSMHMRKHTGEKPFQCQFCAKFFPRSEALAHHIQRHRDLFNFKCAQCHRRLFSAEDLTQHENKCRKRRYECHLCGFTKFGLSYNKFHRHFALKHVGEKYYQCMSCSKSFSSTKLLARHLTEDHPKLLALICPNCNRRHTSRAARDLHQATCMKRRIECYICKMTCRDVKSLRGHMVTKHTGEAKFQCHLCPKKYLVEANFKIHIKSHTKIGLLKCDYCSKEFSHIKYKKKHELKCKKVYECCLCKEIFPSFAILQGTHMRTHLGAKPYKCTLCSKRFASIRTHNLHVIGTHLHQYKFKCNACNETIRQNKDVLKHQKSCLKPIRQAVGIIYFKCSLCGLGLARVPELRQHILNSECIKHPKKIRNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -