Smos008725.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000001.1:9090037-9092519[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0089 0.53 11.0 0.1 1 23 274 297 274 297 0.94 2 11 3.6 2.2e+02 2.7 0.6 2 20 352 369 351 371 0.89 3 11 2.3 1.4e+02 3.4 0.1 2 23 377 399 376 399 0.93 4 11 0.0076 0.46 11.2 1.7 1 23 406 428 406 428 0.98 5 11 0.0036 0.21 12.2 3.1 1 23 435 457 435 457 0.98 6 11 0.00016 0.0098 16.4 0.6 3 22 465 484 463 487 0.89 7 11 0.052 3.1 8.6 9.0 1 23 493 515 493 515 0.97 8 11 0.025 1.5 9.6 2.8 1 23 520 542 520 543 0.96 9 11 0.013 0.79 10.4 0.9 1 23 552 574 552 574 0.97 10 11 3.1e-05 0.0019 18.7 3.2 1 23 580 602 580 602 0.98 11 11 1.2 71 4.3 1.7 1 17 608 624 608 629 0.83
Sequence Information
- Coding Sequence
- ATGAGAAAGAGATATTGTGGTGTAAATTCTTGTCCGAATTTTACTGGAACCGCAGACGAAAATGTCCCATTTTTCAgATTGCCAATTTACGAACCGGAACTTCTGGCTAAATGGAAGCAAGCTGTCAATAGAGAAACCACAGGGACTTTTAAACTATGTGGCTCACACTTCAGACAAGAGGATCTTATAAAGAGTAGAAGGAATATAAGATTGAAACCGGGTGCCATTCCAATGCCCGTTCCAAAAACTGTCAAGACTGAAATATCATATGAAACTATCATAGAGGAACCTCCCACAGTAGACTCTACTCTAGATGAACTTCCCACCGAGGAACCACACACAGAGCACGTGGAAATAATGGATATTGAAGCAAATGAAAGTGCTTCAGATGAGCAAGAATTGTGTCAGTCGTGCATCAACTATGAAGTTCAATTGCAAGCGGCTCATGCGGAGATTACGGCATTAAAGAAGAAATTGAGCGAATTGACCGTAGAAAATAATATGATGAAGACTCAAATTCGATCAATATCAACCAAATATTCAACGTGTCACAGAATATCTACCATCCAAGAGCCAGGAAGTGTGACTCTTACGATTGAACCTGATCAACCGAtttcaatcgatgaaaaaacattgaacgaCTGTTCCATGCTATCCGCTTCTTTTCTCAGCGAAGAGATGGATGAATCATCGAGTGATGAGTCGCCGACAGCTTCAATGAGTGGACCATCAAAAGAGATTGAACAATACAAGGAATCAATTAGGACAGTGGACATAGCAGATGTGTCTCTCGAACCGAGGCAATCGACCCTAAAACTGTTTCAATGCGGAAGATGTGACATGGCATTCGAATTGGCAATAGAACTGTCCCGTCATATAACGGAAtatcattcaataaaaacagtAACTGTCCCGCGTTTGCCAAAAGAGAAGACACGTGctgcgagaaagaaaaaagaagggAAGAGCTACCAGTGTTATTTGTGTAGAATGAgtttcaatacttttttcaaCGGAGTTCATGTTCATATGAAACGCCATGAAAGAGACCAGAAATGCGAGATCTGTAAAACAGAATTAACTCTCAACGAGCTGAATTCACATTTGTGTGGCGATGAGAAAAGCATTCGTTGTGATTACTGCGCAGATGAATTCACAGCTACATCGAAGCTGGTAGAGCATTTGGATAAGTCACATGAAAAGGGAAAATTATTGTatcgatgtgaaaaatgttcaaaatactTCTCCATGTTCGCTCTGAAGGAATTGCATATGAAAGTACATGATAGAGCACCGAAGCAATTTGTATGCAAAGTCTGTCACAAGAATTTTGCTTCCAAATTGCTTCGTAAAGTTCACGTCAAGAGACATAATGAGACAAATTCTCATCTCTGCGAAGAATGTGGCAAAAGTTTTGGATCAGCACGTAGTTTACAGCTTCATAAAAGGGCGTATATCCATAACAAAGAgttaatatttcattgccCCCATTGTTCCAGAAAATTTTTTAATAGGCAAACTTTTAGTAGACATCGTGACAAACATCGAGAATTTAAATACGTGTGCGAAATCTGCCAAACTGAACATCCATCTAAGCAATCATTTGAAGCGCATATGAAGAGGCACCACCGAAGAACAGAGGCCGACAGAAAATATGCCTGCAAATTATGCCCATTGAAGTTCTTCTCATCACAAATTTTGAAATCTCACCAGAAAGTACACACTAGCGTGAGATTGTTCAATTGCCAATTCTGCAACCAATCGTATAAGTATAAAGGGGATTTGAATAAACATCTGAAAACTCATATTGgaaacaaaattcacaaatgCAAAAAGTGCTTTGAACTATTCGAATATAAAGATCTTCTAAAACACGAAGACGGACACTAcctaaaagaaaaagaagcgaatGAAACGAACGAGTGA
- Protein Sequence
- MRKRYCGVNSCPNFTGTADENVPFFRLPIYEPELLAKWKQAVNRETTGTFKLCGSHFRQEDLIKSRRNIRLKPGAIPMPVPKTVKTEISYETIIEEPPTVDSTLDELPTEEPHTEHVEIMDIEANESASDEQELCQSCINYEVQLQAAHAEITALKKKLSELTVENNMMKTQIRSISTKYSTCHRISTIQEPGSVTLTIEPDQPISIDEKTLNDCSMLSASFLSEEMDESSSDESPTASMSGPSKEIEQYKESIRTVDIADVSLEPRQSTLKLFQCGRCDMAFELAIELSRHITEYHSIKTVTVPRLPKEKTRAARKKKEGKSYQCYLCRMSFNTFFNGVHVHMKRHERDQKCEICKTELTLNELNSHLCGDEKSIRCDYCADEFTATSKLVEHLDKSHEKGKLLYRCEKCSKYFSMFALKELHMKVHDRAPKQFVCKVCHKNFASKLLRKVHVKRHNETNSHLCEECGKSFGSARSLQLHKRAYIHNKELIFHCPHCSRKFFNRQTFSRHRDKHREFKYVCEICQTEHPSKQSFEAHMKRHHRRTEADRKYACKLCPLKFFSSQILKSHQKVHTSVRLFNCQFCNQSYKYKGDLNKHLKTHIGNKIHKCKKCFELFEYKDLLKHEDGHYLKEKEANETNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -