Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01000013.1:619957-632609[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.68 41 5.0 1.6 1 23 365 389 365 389 0.89

2 14 3.9 2.3e+02 2.7 0.6 3 20 544 561 543 566 0.93

3 14 0.0095 0.57 10.9 0.1 2 19 588 605 587 606 0.96

4 14 0.019 1.1 9.9 1.5 1 23 627 650 627 650 0.94

5 14 6.1 3.7e+02 2.0 0.0 3 20 657 674 655 679 0.83

6 14 9.4 5.6e+02 1.4 0.1 2 23 695 717 695 717 0.90

7 14 0.076 4.5 8.0 0.2 1 21 722 742 722 743 0.97

8 14 0.065 3.9 8.2 1.4 2 23 879 899 878 899 0.90

9 14 1.1e-06 6.6e-05 23.2 0.9 1 23 905 928 905 928 0.98

10 14 0.03 1.8 9.3 4.3 1 20 966 985 966 988 0.95

11 14 0.023 1.4 9.7 0.1 1 23 997 1021 997 1021 0.98

12 14 0.0099 0.59 10.8 2.5 1 23 1027 1052 1027 1052 0.96

13 14 0.0022 0.13 12.9 4.0 3 23 1061 1081 1060 1081 0.98

14 14 0.00021 0.013 16.1 0.6 1 21 1087 1107 1087 1112 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.68	41	5.0	1.6	1	23	365	389	365	389	0.89
2	14	3.9	2.3e+02	2.7	0.6	3	20	544	561	543	566	0.93
3	14	0.0095	0.57	10.9	0.1	2	19	588	605	587	606	0.96
4	14	0.019	1.1	9.9	1.5	1	23	627	650	627	650	0.94
5	14	6.1	3.7e+02	2.0	0.0	3	20	657	674	655	679	0.83
6	14	9.4	5.6e+02	1.4	0.1	2	23	695	717	695	717	0.90
7	14	0.076	4.5	8.0	0.2	1	21	722	742	722	743	0.97
8	14	0.065	3.9	8.2	1.4	2	23	879	899	878	899	0.90
9	14	1.1e-06	6.6e-05	23.2	0.9	1	23	905	928	905	928	0.98
10	14	0.03	1.8	9.3	4.3	1	20	966	985	966	988	0.95
11	14	0.023	1.4	9.7	0.1	1	23	997	1021	997	1021	0.98
12	14	0.0099	0.59	10.8	2.5	1	23	1027	1052	1027	1052	0.96
13	14	0.0022	0.13	12.9	4.0	3	23	1061	1081	1060	1081	0.98
14	14	0.00021	0.013	16.1	0.6	1	21	1087	1107	1087	1112	0.92

Sequence Information

Coding Sequence: ATGagtgaaattgataaaatgaagaTGTtcAAAATGCTCGAAGATCTGGAGGAAGATACACACTTGTGCATAAAGTGCAGTCACACAATAGTCGGTCTGGAGGAATATATACGTCATCGAAAGAGCCAATGTAGCAAAAGTGTTTCATCCGCCGCATCGTTGAACCGTGAAATAATCGACACTAATCATTCGTATCGATCGTTTGAATTCACTGAACCGCCATCTGTTAAGCACGATAAGCAATTTAGCTTTaattatgaaattgaatccGTTCACCCCGACCACGAAGATTCACACGACGATGTTGTTGTGTCGACGGCCGGCATATTGCCATCGCCAATGCATCAATCGGAGAAAGTTGCCAGCGACTACAAAACAGATCCAAATAAATCGCTATCGGAAAGTTATGATTATAACTATGGTTTGGGcgctgatgtttttttctcgctgctCAATTTGCAGAGTAgttcaaaatcgaaaacgCAAACGGTTACGGCAAATGTTTCCGCCGATGGTGCAAGTTCTTCGTTAATAAAAGATAGCGATAAAATGTTGCATCGAAAGCAAACGGACTCGGGTGGTTTATCGCACAGTGAGCATATAGATGATTGGATTAACAGTGGTGCTTCGACCAGTGGCACCGATAAACTTATGAAAGCAGTGAATGCCATTAGCGGAACAAAGAAACATGTATACGATTCACCTCAATACAATTACGATTACACACATGGTTCGCCGGAGCACAAttacgatgatgacgatgatgaaatCGAGGAGGATTTGGTCGAAGATGTTGAAGATGTTCCCCCGCACACTCATACTGGCGGCAAGTGGAAACCCTCGGAAAGAAATCGTTCAATGCACACCGCATCACGATGGTATGAGCGTTGGGATATTCCCGAAGAAAATAATCAACTGCCATTGACGTCAGCAACGGCCGCGACCGGATCAAATGAAGAACTCGCTGAAAATGCAGACGAATTCCAACCACCACCGAGCCATACAAAAGGCAAATGGGTGCCCGGCACAAAAATCATTAAACTCGATTACAAACACAAAGAGCGTCACGATTCCGAAACATTTACCGAACAATTTTTGTGTCGAACTTGTAATCGCAAGCTTTCGTCGCGAATCGTTTATGAACGACACCTAAGGTCAAAATTGCACATGAAACGCTCTCAACCAGAAAATGAACTGGAACAGGCATCGTTGCCACTGCCGAACATTGAAGAGATTGTTGGCAAAAAATGCTCCGCCAATTTGGacacacaaatgaaacgaaagcgaaaaagaaaggaCGAAATTGCATACATCAAAGAGCACCCGTTTAACGCAGTTAAGAAGCGGAATCGTCGCTTTAATTACATTAAATGCGGCGTGTGCAAAACGCGATTACGTACATTCATCTATGGGAAACATTTAATTTCACATTATCATTACCGACGAATGTTTAAAAATCCAACGGAATCGTATGCTACGATATTGGATAATATTCATCGAATCGTACTTCAATCACCGTATCAATGTCAACCATGCCGATTTTATGCAAACACCCAAGAAATGTTTCTGCGCCACTGGGATTCGGATGAACATTTTGAAACGGTTTCCGCTGTCAGTGGACAATTTTGGTGTGCATTTTGCAAATTCACTTGCGATAGTAACGAAGATATGCGTGCCCATTTGGTCGGCATGGATCATCAGGAAGTGGCTATGGCCATTAATAGGTCAGTGCCGATAATTTGCCGCAAAAAGAGTCTTATCCAATGTGATGAATGCAAAGAAGAGTTTTCCTTTAACATCGAGCTGCGTAAGCATGCACCCAACTGCACGGGATCGAAGCCATCACTCGGCACAGCATCAGATCAATACCAGGGAAAGTTTTATTGCTCCACTTGTAAGGAATGTTTCGCATCAATCGTCGCATATCAACGACATGCAACCTCCgttcattcaacaaaatccTATTTGTGTGGCCCATGTGGTCAATCCTTTCCGGAATTGGAAGCAGCGAGGCGACATCGCGTTTCGGCTGAGCATAAAGTTCAAGCGGCCCGCATAAAAGCAAAGAAAACTTTGAAACGTAAATGTGTGGTGTGCGGCGAAATGCAAGATGATTTACTTTTGCTCAAAGAACATTTAAAGCTTGTCCATCCAGAGCACAGTTACTCGTGCTATTTTTGCGCACAGAAATTCATTCTACCACAAGAGTTAAGCCGTCATATTCGAGACAAAGTGTGCAGAACCGATGACAAGCCACCGTGCAATGATGTATGTCACGAAGGCGATGATTTGAATCCAATGTCACTTCTAGAGTTGCCCATAATTTCGGATATCTCACAAGATGATGGAGTAACCAATCTGATTGTTACATCACAAAATGATCCGTCGACGTCAGTCGATGCAACCGCAGCAGAGTCCCTAGTTCAAGAAAATTATCTAATCATTGAGCACGCAACTGAATTAGATTTGGCCCAAAGTCAGCTTCAATTGAAGGACGAAGCCGGCCCATCAACCGAAGTGGAGCATAAAATTCTTTGGGGATGCAAACAGTGCGAGTTTCGCACACCGACTGAAGCCGAGTGCATATTCCACGAGATGCTACACAAATGGAACATCTGTAACGACAATAAAATTCCATGTCCAATTTGTAATCGAACATTTGGAAAGAATTCACTGCGTTGTCACTTGCGATTGCATACAAACGAACGGATTTTCCAATGCGATCAATGCGATTTGAAATTTACGCGTAAAGCTAACCTTAAAGAGCACATCCAACGTATTCATTTGAAGCAGAAGAAGACCGATCCGAAGAAGCAGCCGTCAGCATTGAATCGACTGAAGCAGAAAAGTTCATCGTCGCCACACCACCACCAGCATCTGAAGAATGAACAATTATTTGAATGCTCAATATGCGAAAAGAGATTTTGGAAGAAGAGTTTACTTGAGCAGCATATGCATTGTCATCGTGAAATGGTGTCCGTTAAAGTGTTTGAATGCCCGGAAAAGGGTTGCTTATTCAGCGGACGTAGTGCAGCCGAACTGCGTGTACATCAGAACACTCATTCAGACGAGAAGAACTATCATTGCACCGTAGATAATTGCAGTTATAAAACGAAAACTAACGCATTGCTTAACAGACACATCAAGTCTCAACATCAAACCGACTCCATTCAATTATTATGTCCCCATTGCGATTTCCAAACAAAAGTTTCGAGCCATTTGAAACGACACGAACGTATTCACAGTGGAGATAAGCCATTTGCCTGTCCACACTGCGATTACGTTTCCAACAATCCGGAAAATTTACGTAAACATGtgatcaaatcaaacaaacaccCTGGACGATGCTTGTATGAGTGTCAAACATGTTTGGCACCACCGTTTGCTACgaataattcaaaagaatACAAATTTCATCTTGTTTCTGTGCataaagagaagaaataa
Protein Sequence: MSEIDKMKMFKMLEDLEEDTHLCIKCSHTIVGLEEYIRHRKSQCSKSVSSAASLNREIIDTNHSYRSFEFTEPPSVKHDKQFSFNYEIESVHPDHEDSHDDVVVSTAGILPSPMHQSEKVASDYKTDPNKSLSESYDYNYGLGADVFFSLLNLQSSSKSKTQTVTANVSADGASSSLIKDSDKMLHRKQTDSGGLSHSEHIDDWINSGASTSGTDKLMKAVNAISGTKKHVYDSPQYNYDYTHGSPEHNYDDDDDEIEEDLVEDVEDVPPHTHTGGKWKPSERNRSMHTASRWYERWDIPEENNQLPLTSATAATGSNEELAENADEFQPPPSHTKGKWVPGTKIIKLDYKHKERHDSETFTEQFLCRTCNRKLSSRIVYERHLRSKLHMKRSQPENELEQASLPLPNIEEIVGKKCSANLDTQMKRKRKRKDEIAYIKEHPFNAVKKRNRRFNYIKCGVCKTRLRTFIYGKHLISHYHYRRMFKNPTESYATILDNIHRIVLQSPYQCQPCRFYANTQEMFLRHWDSDEHFETVSAVSGQFWCAFCKFTCDSNEDMRAHLVGMDHQEVAMAINRSVPIICRKKSLIQCDECKEEFSFNIELRKHAPNCTGSKPSLGTASDQYQGKFYCSTCKECFASIVAYQRHATSVHSTKSYLCGPCGQSFPELEAARRHRVSAEHKVQAARIKAKKTLKRKCVVCGEMQDDLLLLKEHLKLVHPEHSYSCYFCAQKFILPQELSRHIRDKVCRTDDKPPCNDVCHEGDDLNPMSLLELPIISDISQDDGVTNLIVTSQNDPSTSVDATAAESLVQENYLIIEHATELDLAQSQLQLKDEAGPSTEVEHKILWGCKQCEFRTPTEAECIFHEMLHKWNICNDNKIPCPICNRTFGKNSLRCHLRLHTNERIFQCDQCDLKFTRKANLKEHIQRIHLKQKKTDPKKQPSALNRLKQKSSSSPHHHQHLKNEQLFECSICEKRFWKKSLLEQHMHCHREMVSVKVFECPEKGCLFSGRSAAELRVHQNTHSDEKNYHCTVDNCSYKTKTNALLNRHIKSQHQTDSIQLLCPHCDFQTKVSSHLKRHERIHSGDKPFACPHCDYVSNNPENLRKHVIKSNKHPGRCLYECQTCLAPPFATNNSKEYKFHLVSVHKEKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -