Smos016331.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- DDB_G0292354
- Assembly
- GCA_009176505.1
- Location
- VUAH01000003.1:849889-863459[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 1.4 85 4.0 0.3 1 23 163 185 163 185 0.92 2 26 0.0006 0.036 14.7 5.0 1 23 357 380 357 380 0.96 3 26 0.0001 0.006 17.1 1.4 2 23 393 415 392 415 0.94 4 26 0.85 51 4.7 0.6 1 21 421 441 421 442 0.96 5 26 0.00071 0.042 14.4 2.4 1 23 518 541 518 541 0.92 6 26 0.85 51 4.7 0.6 1 21 547 567 547 568 0.96 7 26 0.0021 0.12 13.0 0.3 2 23 656 678 656 678 0.92 8 26 0.88 53 4.7 1.9 1 19 683 701 683 702 0.94 9 26 1.7 1e+02 3.8 0.3 1 23 707 729 707 729 0.92 10 26 0.4 24 5.8 4.9 1 23 913 936 913 936 0.94 11 26 0.19 11 6.8 0.7 2 23 947 968 946 968 0.84 12 26 1.5 87 4.0 0.2 1 23 1062 1084 1062 1084 0.92 13 26 1.3 78 4.1 2.3 1 20 1267 1286 1267 1288 0.95 14 26 0.019 1.1 10.0 1.6 3 22 1327 1346 1326 1348 0.89 15 26 2.6 1.5e+02 3.2 1.3 1 23 1380 1403 1380 1403 0.93 16 26 0.18 11 6.8 1.1 1 23 1410 1433 1410 1433 0.96 17 26 2.4 1.4e+02 3.3 0.3 1 23 1438 1460 1438 1460 0.89 18 26 4.4e-05 0.0026 18.2 0.5 1 22 1650 1671 1650 1671 0.96 19 26 4e-05 0.0024 18.3 1.3 2 23 1711 1733 1710 1733 0.96 20 26 5.2 3.1e+02 2.3 1.6 1 20 1739 1758 1739 1760 0.94 21 26 0.0013 0.078 13.6 2.7 2 23 1798 1820 1797 1820 0.90 22 26 0.032 1.9 9.2 5.1 1 23 1855 1878 1855 1878 0.96 23 26 0.26 15 6.4 5.3 2 23 1885 1907 1884 1907 0.96 24 26 0.00046 0.028 15.0 0.6 1 23 1915 1937 1915 1937 0.95 25 26 0.011 0.64 10.7 1.3 2 23 1944 1967 1943 1967 0.96 26 26 6.6 3.9e+02 1.9 0.3 1 23 1973 1998 1973 1998 0.89
Sequence Information
- Coding Sequence
- atgaaattgGTACATAGTGATCAACTCATTGGAAGTGATGGAGTTACTATTTACAAGTTTGATAGAACACAACAACATATTGGTGAAGGTTATTTTGGAGATGTTGTGATTGGAAACAAAACTTTTAGAGGTCGAGTAACTCAAGTTGCGatgaaattcgaatcgaaaaacGATGGACGAACGTCCCTCAAGCATGAAGCAGACATTTACAAATCTTTGCCAAAACATAAATCGATTCCGGAATTCCATGATTTTTTGGCAAAAGAAACCTATGATGTTCTCATAATTGAATTATTGGGCCAAGACTTACGCAAATATCGAAACAATTCTCCTaacaaattttccattgaaacaacaatgaaGATCGGCCTACAACTGTTAGATGCACTTAAACATATTCATGACCATGGAATAATTCATGGCGATCTGCTTTTAAAAAACGTTGCTGTTGGGCATAGagacaaatcaaaaatttatctTTTCgTCCACCAGTGTTTGTTCTGTCCACAAACATTCGGCAGTGCCGTAGAAAAGGATGACCACATTCTGGAGCATTTTGCTCAAGAAACGTGTACCGATTGCGACCAAAGCCTGATTCGAATCGGAAGGAATTTATACACACTACACAACGCAGTGACATGCATCAAGAGAGAATCGAAATTGGACGTCAGTATTCAGCACGATAGCCATAAGAGATCTATCAACCAAAACAATGATGATGGGGATTATAATGCAATTGTCGCACCTTCGAATACAGATTATGGACAGCAACTAAACATCAAACTTGAGCCCGAAACAGAACATAATGAACAGCTCATGAGTGTTGATCCAATGCATTTTACAGAGTCGATCAACCAAAATACCATGAAATCGAATACAATCCGTATTGATCAAGTGGAAATTAAAACGGAGCCAGGAGCACAAGTTGAACAGTTTATGTCTGTGGATGTGAACAATTTCACACAACCGAACAATATGGATTTGGAATCAGGTCAAGAGTTCCAAggtcaatttcatttaactCCGTTAGAAAAATTGCCTGAGCCGAAAAGCAAGAGTAACTTCAAGCACAAATGTGACTTTTGtgaaaaatcgtttcgaaAACCATATCAACTTGAACAGCACAAAAAGTATACACATAGCATTGCAAATCCGGGTTCAGTGATTGACCGATGGGAATGTAAAATTTGCAATATAACTTTTAAAAGGAAAGAATATCTAGACAAAcatattaaattcaaacacacaGATCGCATAAAATACACTTGTGATTTTTGCTGGGCGATATTTATGTCAGAGAATTCGTTGGACAATCACCATCGGTTTTACTGTAAACGCAGTAAAAAGTCGGCGAATAAGTCTActgacaatgaaaaattaatcgaaGTGGAGACGGAAGTTAAAGAACTGGTACCTGCGGCAGCGAACAATTTCGCAAAAATCGATGGTAACTCCAAACACAAACCCAAGTGTGACGTTCGTGAGAAATCGTCTCGAAACTCCTGGCAAATGGGAGAGCACGAAGAATATACACATATCGAAACCGACCAGTTCGAATGTAAAATATGCAACATAGTTTTTAAAAGGAAAGAATATCTAGACAAacataataaattcaaacacacaGATCGCATAAAATACACTTGTGATTTTTGCTGGGCGATATTTATGTCAGAGAATTCGTTGGACAATCACCATCGGTTTTACTGTAAACGCAGTAAAAAGTCGGCGAATAAGTCccaggaaaaaaataaatttgtcaaAATGAAGCCAGGAGTTGAAGAGCTGATACCTGTGGCTGCAGAAGATTCTACTGGAACGGGTGGTGTGAAAATTAACTCAAGTCAAGTGCTTCACAATCAGCGTGTAACTGTATCAATGGAATCTTCTAATAATCTCGCATGTTCCAAACTACCGAACAAAAGCGTTGATGAATCTAAAGGCAATGACACAAATGGATCTAGAACTTGtgatatttgcaaaaaaacactTGCCACTCCTGCAAGTTTACGAACCCATCAATTTTTAGTTCATAAGACCGGAGGTCACCATTGCACCCGTTGTAAGCAGGTCTTTCGTAAAGTCCAAGGCTTGCAAAACCATGGACCAAAATGCATTCACGAATGTTTGTTCTGTCCACAAACATTTGGCAGTGCCACCGAAAAGGATGACCACATTCTGGAGCATTTTGCTCAAGAAACGTGTACAGATTGCGACCAAAGCCTTCTTCGGATCGGCAGCAATTTATACACACTACACAACACAGTAACATGCATCAAGAGAGAATCGAAACCTGACGTCAGAATTCAGCACGATAAGTATAAGGGATCTATCAACCAGAACTGCGATGAATGGAATTATAATGCAACAGCCGCAATTTGTGATCAACAATTGGACATAAAACTCGAGCCCAGAATGGAACAGAATGAACAGCTCATGAGTCCGATAAATTTTGCGGAAACAAGTTCTATCGAAAACTACCAAGGATCCAACAACCAGAAtagcattgaaaatatttctgcTATTGATGTTACACTATCGAATACAGTATCTGTTGGggaaatcgaaattaaaatggaGCCAGAAGCACAAGGTGAGCAGTTCATATCTGTGGATGTGAACAATTCCACCGAACTGAATGATATGGATTTTGACTCAAGTAAAGTGGTCTACAGTAAACATCTTTCAAACGCATTAGGCAAATTTAGTGAAGAGCAAAGCAAAAGCAACTACAAGTACAAGTGTGACGTTTGTCTGAAACTATTTAAATGGTCCTCGCAACTGAAACACCACAAAAAGTTCAGACACCCTGCTCCAGGAACACAAATCGATCGAATCCAATGTGAAATTTGTAAAACATTTGTTCGGGCAGATACCATTcgaaatcatatgaaaaagcAACATTCAAATTGCATCAAGTACAACTGTGAATTTTGCTGGGGAAAATTTCTGTCGAAAAAATCTTTGGATAAACATGTTCCACGTTGTAAACGACCGAAGCAGAAGCAATCAAGTTATATGTCTGGTAAACCGGATGAAAAGgaacaaagcaaaagaaaCTACAAATATAATCGAGCTCCGTGTGACATTTGCGGCGAATTATTCTATACGTTCTGGATGGATAGACACAAAAAACTGAAGCATAGCTCGAACGATTTCGATCAGTATCAATGTGATATATTTCACGAATGTTTGTTCTGTCCACAAACATTTGGCAGTGCCGGCGAAAAGGATGACCACATTCTGGAGCATTTTGCTCAAGAAACGTGTACGGACTGCGACCAAAGCCTGATTCGAATCGGAAGCAATTTATACACACTACACAACGCAGTAACATGCATCAAGAGAAAATCGAAACTGGACGTCAGTATTCAGAACGATATCCATAGGAGATCTATCAACCAAAACCATAATGAACGGGATTGTAATGCAACATTCGATTCATCCAACATCATTTTTGATCAGCAACTAAATATCAAACTCGAGCCCAGTATGGAACAGAATGAACAACTCATGAGTGTTGAACCGATGAATTTTGCGGAAACAAGTTCTATTGAAAACTACCAAGGAATTAACAACCCGAATagtaatgaaaatatttttgctattGATGTTACACCATCGAATACAGTATCTGTTAGggaaatcgaaattaaaatggaGCCAGAAGTACAATTTGACCAGTTAATATCGACAGGGGATGTGAACAATACTACAGAATCGAATGATATGGACTTTGGCTCAAGTCAAGTGTTTCAAAGTCAATCTAGTGCAACTCGAActcgaacacaaaaaaaattcaaatgtgatttttgctCCAATGTGTTTCTGTCGAAGAAATCATTAAGTCATCATCAGTCGCTTTGCTGTAAACGTGATAAAAAGTCATTGAAAGAGACTCCAGGCAATGATGTTGCTAGTATTGAAAGTGATCAAATTGATGACGGAAATAGGGAGAATAGCAAAAAAGATGGGTTTTGTaatatttgcaataaatttttttacaataaaaGTGGCGCGAATAAGCATAAGTTTGAGGTTCATAAAATTGGAGGACATCCTTGTATCAACTGCAAACAAGTATTTTTTTCGACCAGAGCACTACAAATTCATGATTGTGAGATGGCAAAGAAAACGTACGAGTGTTACATCTGTCATAAGGGGAGTAAAGCAATAAAGAGTCTACGATTTCATATTCTCACTCTTCACATTTCATCAAAAAGAAAGTTCAATTGTGCCATATGCGGAATCggttttcattatttaaatTCATATGAAGATCATAAGAACCGGCAACACTTGAACGTGGTCCATCAGTGTTTGTTCTGTCCACAAACATTTGGCAGTGCCATCGAAAAGGATGACCACATTCTGGAGCATTTTGCTCAAGAAACGTGTACCGATTGCGACCAAAGCCTGATTCGAATCGGAAGCAATTTATACACACTACACAACGCAGTGACATGCATCAAGAGAGAATCGAAATTGGACGTCAGTATTCAGCACGATAGCCATAAGAGATCTATCAACCAAAACTATGATGATGGGGATTATAATGAAATTGTCGCACCATCGAATACAGATTATGGACAGCAACTAAACATCAAACTTGAGCCCGAAACAGAACATAATGAACAGCTCATAAGTGTTGATCCGATGAATTTCGCGGATGTAAGTTATAATGAAAACTACCAAGGATCCAATAATCAGTATAGAGATGAAGATAATTCAGGTGTTGGTGTTACACCATCAAATACAGTCCCTGTTCAGCATGAAGAGATCAAAATGGAGCCGGGAGCACAAGACGAACAGTTTATCTCTGTGTATGTGAACGATTTCACTGTAACAAGTGGTATGGATAGTGGCCCAGGTCAAGTGTTTCACAGTCAACCTCTTTCAACGGCAATAGAAAGAATATCTGAAGCAAACAGCAAGAGTAACAATGATTACAAGTGTGACATTTGCGGAAAAATCTTCCAACGATCCTCTCAACTGGGACAGCACAAAAAGACATTTCTGTCGCAAAAATCATTGGATAATCATCTCCCGAAGTgtgaacaaacaaagaaaaccgAATTATCTCAACGGTCAAAGAAAAGGGCAGATCAGCGTACAGATTGTGACCGAATGTATTGTGAAATCTGTAAGAGGGTATTTAACAGCAAGATAACTCTACGCCAACATATGCGTCTTAAACACGACCCTTGCACGAAatttaaatgtgtgttttgctGGACTGTATTTCTATCGAAGAAATCATTAGATAATCATCATCTGTTTCGCTGTAAACGCTATAAGAAGTCGTTGATAGAGAGTCCAGGCAATGATATTGCTAGTACCGAAAAAACTCCAATCGATGACGGGAACATGAAGAGTAATGAGAAAGataaatattgtgaaatttgCGATAAAACATTCTGCAACAAAAGTACCGCTGAAAGACATACATTTTTGGTGCATAAAATTGGTGGACATCACTGCATCGATTGCAAACAAGTGTTTCATACTGCAATAGGTCTTCTAAACCATGGTCCAAAGtgtgaaaaattattgcaGCAAACGTTTGAATGCCATATCTGTCACAAAATCAGTAAATCAAAAAGGAATCTTCGCTTTCATCTTCAATCAATCCATGTGAAAcgcagaaaaatcaaatgtgaaaaatgcgatcgacatttttcatgtaaatcGGCATACGAAAGCCATAAGAATCGAATCcacttgaaaatgaatattcataattttgtGTGTAGCACTTGTGGACGAGCGTTTACAACCAAGACTAGATTAGTGCAACATGAGTACATTCACACGGGAGAACGACCTCTGAAATGCACTCACGTTGGGTGTGAGCAAACTTTTAGAACTTCCTCGGCCAAATATGCACATCTGAGAATCCATCGTGGACAAAAGAAGTTCAAGTGTCGAATCGATGGATGCGATCAAAAATTCGGTGGAGTGATTGGGTACAAAAAGCATAAGCTCAATGTACATGGCATACCAATGACTAAATAA
- Protein Sequence
- MKLVHSDQLIGSDGVTIYKFDRTQQHIGEGYFGDVVIGNKTFRGRVTQVAMKFESKNDGRTSLKHEADIYKSLPKHKSIPEFHDFLAKETYDVLIIELLGQDLRKYRNNSPNKFSIETTMKIGLQLLDALKHIHDHGIIHGDLLLKNVAVGHRDKSKIYLFVHQCLFCPQTFGSAVEKDDHILEHFAQETCTDCDQSLIRIGRNLYTLHNAVTCIKRESKLDVSIQHDSHKRSINQNNDDGDYNAIVAPSNTDYGQQLNIKLEPETEHNEQLMSVDPMHFTESINQNTMKSNTIRIDQVEIKTEPGAQVEQFMSVDVNNFTQPNNMDLESGQEFQGQFHLTPLEKLPEPKSKSNFKHKCDFCEKSFRKPYQLEQHKKYTHSIANPGSVIDRWECKICNITFKRKEYLDKHIKFKHTDRIKYTCDFCWAIFMSENSLDNHHRFYCKRSKKSANKSTDNEKLIEVETEVKELVPAAANNFAKIDGNSKHKPKCDVREKSSRNSWQMGEHEEYTHIETDQFECKICNIVFKRKEYLDKHNKFKHTDRIKYTCDFCWAIFMSENSLDNHHRFYCKRSKKSANKSQEKNKFVKMKPGVEELIPVAAEDSTGTGGVKINSSQVLHNQRVTVSMESSNNLACSKLPNKSVDESKGNDTNGSRTCDICKKTLATPASLRTHQFLVHKTGGHHCTRCKQVFRKVQGLQNHGPKCIHECLFCPQTFGSATEKDDHILEHFAQETCTDCDQSLLRIGSNLYTLHNTVTCIKRESKPDVRIQHDKYKGSINQNCDEWNYNATAAICDQQLDIKLEPRMEQNEQLMSPINFAETSSIENYQGSNNQNSIENISAIDVTLSNTVSVGEIEIKMEPEAQGEQFISVDVNNSTELNDMDFDSSKVVYSKHLSNALGKFSEEQSKSNYKYKCDVCLKLFKWSSQLKHHKKFRHPAPGTQIDRIQCEICKTFVRADTIRNHMKKQHSNCIKYNCEFCWGKFLSKKSLDKHVPRCKRPKQKQSSYMSGKPDEKEQSKRNYKYNRAPCDICGELFYTFWMDRHKKLKHSSNDFDQYQCDIFHECLFCPQTFGSAGEKDDHILEHFAQETCTDCDQSLIRIGSNLYTLHNAVTCIKRKSKLDVSIQNDIHRRSINQNHNERDCNATFDSSNIIFDQQLNIKLEPSMEQNEQLMSVEPMNFAETSSIENYQGINNPNSNENIFAIDVTPSNTVSVREIEIKMEPEVQFDQLISTGDVNNTTESNDMDFGSSQVFQSQSSATRTRTQKKFKCDFCSNVFLSKKSLSHHQSLCCKRDKKSLKETPGNDVASIESDQIDDGNRENSKKDGFCNICNKFFYNKSGANKHKFEVHKIGGHPCINCKQVFFSTRALQIHDCEMAKKTYECYICHKGSKAIKSLRFHILTLHISSKRKFNCAICGIGFHYLNSYEDHKNRQHLNVVHQCLFCPQTFGSAIEKDDHILEHFAQETCTDCDQSLIRIGSNLYTLHNAVTCIKRESKLDVSIQHDSHKRSINQNYDDGDYNEIVAPSNTDYGQQLNIKLEPETEHNEQLISVDPMNFADVSYNENYQGSNNQYRDEDNSGVGVTPSNTVPVQHEEIKMEPGAQDEQFISVYVNDFTVTSGMDSGPGQVFHSQPLSTAIERISEANSKSNNDYKCDICGKIFQRSSQLGQHKKTFLSQKSLDNHLPKCEQTKKTELSQRSKKRADQRTDCDRMYCEICKRVFNSKITLRQHMRLKHDPCTKFKCVFCWTVFLSKKSLDNHHLFRCKRYKKSLIESPGNDIASTEKTPIDDGNMKSNEKDKYCEICDKTFCNKSTAERHTFLVHKIGGHHCIDCKQVFHTAIGLLNHGPKCEKLLQQTFECHICHKISKSKRNLRFHLQSIHVKRRKIKCEKCDRHFSCKSAYESHKNRIHLKMNIHNFVCSTCGRAFTTKTRLVQHEYIHTGERPLKCTHVGCEQTFRTSSAKYAHLRIHRGQKKFKCRIDGCDQKFGGVIGYKKHKLNVHGIPMTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -