Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01000003.1:2306266-2308766[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.44 26 5.6 0.5 1 23 8 30 8 30 0.93

2 14 0.069 4.2 8.2 6.1 1 23 235 258 235 259 0.97

3 14 0.26 15 6.4 5.0 1 23 265 288 265 288 0.96

4 14 1.6e-05 0.00093 19.6 0.2 1 23 294 316 294 316 0.96

5 14 0.31 19 6.1 3.9 1 23 322 345 322 345 0.98

6 14 0.22 13 6.6 1.3 1 23 351 376 351 376 0.93

7 14 0.0018 0.11 13.1 0.2 1 23 424 446 424 446 0.97

8 14 0.0048 0.28 11.8 2.0 1 23 453 477 453 477 0.98

9 14 0.46 27 5.6 2.5 1 23 482 507 482 507 0.90

10 14 0.39 23 5.8 7.8 1 23 625 648 625 648 0.95

11 14 0.00033 0.02 15.5 2.6 1 23 653 676 653 676 0.91

12 14 0.65 39 5.1 0.2 1 23 681 704 681 704 0.90

13 14 4.2e-06 0.00025 21.4 2.8 1 23 710 732 710 732 0.99

14 14 0.0011 0.064 13.9 0.3 1 23 738 761 738 761 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.44	26	5.6	0.5	1	23	8	30	8	30	0.93
2	14	0.069	4.2	8.2	6.1	1	23	235	258	235	259	0.97
3	14	0.26	15	6.4	5.0	1	23	265	288	265	288	0.96
4	14	1.6e-05	0.00093	19.6	0.2	1	23	294	316	294	316	0.96
5	14	0.31	19	6.1	3.9	1	23	322	345	322	345	0.98
6	14	0.22	13	6.6	1.3	1	23	351	376	351	376	0.93
7	14	0.0018	0.11	13.1	0.2	1	23	424	446	424	446	0.97
8	14	0.0048	0.28	11.8	2.0	1	23	453	477	453	477	0.98
9	14	0.46	27	5.6	2.5	1	23	482	507	482	507	0.90
10	14	0.39	23	5.8	7.8	1	23	625	648	625	648	0.95
11	14	0.00033	0.02	15.5	2.6	1	23	653	676	653	676	0.91
12	14	0.65	39	5.1	0.2	1	23	681	704	681	704	0.90
13	14	4.2e-06	0.00025	21.4	2.8	1	23	710	732	710	732	0.99
14	14	0.0011	0.064	13.9	0.3	1	23	738	761	738	761	0.96

Sequence Information

Coding Sequence: ATGGATGAATTGAAAGCAGTGCatcaatgtttgttttgccAGCAAACATTTGGCAGTGCCGCTGACAAAGACGATCACATTCTGGAGCATTTTGCTCAAGAAACTTGCTCGGAATGCGATGAAAACTTGATTCGAATCGGTGGATATTTGTATGTTCGACATAATGAAGCGACATGCATAAAGAAGGTGTCAACCTCGGAAGAAAATGTCGAATCATGTACGGTCATCGAATCAATTGCAGCAACGATGGTGTGTGACCCTTTGGAATATGATGAACTTAGCACGGCCACAAATCCGATGACATTGCATACACGTGAAACGGAAATGCCAAACATTAAAACGGAATCAGTCAATTGTTATCAAGAAGACGAAGACATTTTGATGGATATAAATGGCTTGGAATCAACAATACAGGAGAATGAGATTCAGCCTCCAGCAGCAGATTTGGCGAGCAGATTTCCGTACATCAACCTCAATCCAGTGGTTGTGTTAGAAGACATTCTCAAAAAAACAACCCCAGAACATTGCATAGGAATCGAGATCAAAGAGGAAGCTATCGGTTGGAATAGTCATGCGTATGAACATCATGATGAACATGAATCAACTGAGCGGTGTAAAACAGAAACTGACAAACAACTCCAAAGCCATTTGTCgatatgcaaaaataaaaaagaaacgaagaagaaatataagtcgaaaatattcgaatgCTTCGTGTGTCAcaagattttgaaaaataaatgcagtGTTATAAATCACCTAAAAACCATCCACCATGAAAAGGGGAAGCAGTTCAAATGTGAAACGTGCGGTCTATCATATTTCTTCCGTTGTCATCTTCAATTCCATATCAATGTCGTCCACCTGAAAATTCGTCAATACGTGTGTGGCATGTGTGAAAAGTCATTTAAAACGAATGGAGAGTTACGGATCCATGAATATGTTCACACCGGGCAAAAACCTTTCAAGTGCAAATACGGATGTGAAAAGTATTTTGAGGACTACAAAACAAGGCGCGAACATTATAGCAAGCACACCGGTATAGAACCATATCGTTGTTCGATTGATGGATGTGATAGACGTTTTGACTGCATAACAAATTTGCGGCAACACAAAGCCGTACAACATGTCGTATACACATCCAAACGTAAATCAAAACGTCAatccaaaattcatttggatttgttcgatgagaaagaaaagcaaCAGACAGAACATCCAGATGATAGCAACAGCGGCAAATCGGCAAATCCCCACTTTAAACCAATTTACCCATGCAGCAAATGTGATGAATTCTTTCAAAGTGAACAAGCATTGTCGGAGCATTTATCTATTCATGGGAATGACAAGAGAACATTCAAGTGCACTTACGCAGGATGCGAAAAGCGTTTCAAAAATAGACAGGGACGAAAATTACATCTAAACTCACACACAGATGAAGTGCATGTTTGCAAAATCAACGGATGTGGAAGGCATTTTAAATTTCGATCTATTTTGGGACTGCATCAAACCAGAGACCATAGTAAACCGTTGTCAAAAAATCAGGAACGAACTCATCAAGAAGACCAAGGATTGGATCAGGCAGATGAACAAGGAAGAGAACCGATTCTGGAACAACTAGATCAAGTTTCTACATTCATTCTCAAACAAATTGACGCTCCAACAATAGAATACATATTGCCAAACGATGATGAGCCAATGCGACAGAACACAATAAGTATGCAAGATCTGGCCATTAAATTGGAACCCATCCAGCAACCAGATGGTGAAAACACCGTCGAGAATATTGAGCAAAATTATGAATACATCAAGGTTGAGGAGCTTACGATTGAACCCCAACCGTGTGAAGTGCAAAACCAACAAGAGACTGAGCACAGCTGTGATAATTGCGgcaaaaaattcttttcgcGATCCTCGAAGGAGTGCCACATGAAGCGGTTTCATACTGGGTCTGGATTCTCTTGTCAAATATGTAAAAAGATATTCTCAAGTCGTGATAGCCTTCGGTACCACAATTATCGTACACACAAGGCAAAAAAGTATAAATGTGAATTGTGTGaaatttggtttcattcgGAAAGTGAGGTTGAAAGACATACCGATGCgatccatttgaaaataagaaaGTTCAAATGTGAACAATGTGAAATGACGTTTAAATATAAGAACAACCTTACAGCACATAGGCGATCACATACGAGTGAGAAATCATACGCGTGTAAAAATTGTGCAGAAATATTTAACAAAGAAATGGAGCTGAGGAAACATATGCTAGTAAAACATCTGATCTGa
Protein Sequence: MDELKAVHQCLFCQQTFGSAADKDDHILEHFAQETCSECDENLIRIGGYLYVRHNEATCIKKVSTSEENVESCTVIESIAATMVCDPLEYDELSTATNPMTLHTRETEMPNIKTESVNCYQEDEDILMDINGLESTIQENEIQPPAADLASRFPYINLNPVVVLEDILKKTTPEHCIGIEIKEEAIGWNSHAYEHHDEHESTERCKTETDKQLQSHLSICKNKKETKKKYKSKIFECFVCHKILKNKCSVINHLKTIHHEKGKQFKCETCGLSYFFRCHLQFHINVVHLKIRQYVCGMCEKSFKTNGELRIHEYVHTGQKPFKCKYGCEKYFEDYKTRREHYSKHTGIEPYRCSIDGCDRRFDCITNLRQHKAVQHVVYTSKRKSKRQSKIHLDLFDEKEKQQTEHPDDSNSGKSANPHFKPIYPCSKCDEFFQSEQALSEHLSIHGNDKRTFKCTYAGCEKRFKNRQGRKLHLNSHTDEVHVCKINGCGRHFKFRSILGLHQTRDHSKPLSKNQERTHQEDQGLDQADEQGREPILEQLDQVSTFILKQIDAPTIEYILPNDDEPMRQNTISMQDLAIKLEPIQQPDGENTVENIEQNYEYIKVEELTIEPQPCEVQNQQETEHSCDNCGKKFFSRSSKECHMKRFHTGSGFSCQICKKIFSSRDSLRYHNYRTHKAKKYKCELCEIWFHSESEVERHTDAIHLKIRKFKCEQCEMTFKYKNNLTAHRRSHTSEKSYACKNCAEIFNKEMELRKHMLVKHLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -