Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01006225.1:19493720-19495414[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.2 12 6.7 0.8 1 23 125 148 125 148 0.95

2 10 0.019 1.1 9.9 4.0 2 23 283 304 282 304 0.96

3 10 0.00021 0.013 16.1 3.8 1 23 310 332 310 332 0.99

4 10 0.0017 0.1 13.2 3.9 1 23 338 360 338 360 0.97

5 10 3.2 1.9e+02 2.9 0.4 3 23 393 413 391 413 0.72

6 10 1.8e-05 0.0011 19.5 4.2 1 23 419 441 419 441 0.99

7 10 0.00045 0.027 15.1 0.4 2 23 448 469 447 469 0.96

8 10 0.00066 0.04 14.5 7.3 1 23 475 497 475 497 0.98

9 10 0.0018 0.11 13.1 0.3 1 23 503 525 503 525 0.98

10 10 9.5e-06 0.00057 20.3 2.1 1 23 531 554 531 554 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.2	12	6.7	0.8	1	23	125	148	125	148	0.95
2	10	0.019	1.1	9.9	4.0	2	23	283	304	282	304	0.96
3	10	0.00021	0.013	16.1	3.8	1	23	310	332	310	332	0.99
4	10	0.0017	0.1	13.2	3.9	1	23	338	360	338	360	0.97
5	10	3.2	1.9e+02	2.9	0.4	3	23	393	413	391	413	0.72
6	10	1.8e-05	0.0011	19.5	4.2	1	23	419	441	419	441	0.99
7	10	0.00045	0.027	15.1	0.4	2	23	448	469	447	469	0.96
8	10	0.00066	0.04	14.5	7.3	1	23	475	497	475	497	0.98
9	10	0.0018	0.11	13.1	0.3	1	23	503	525	503	525	0.98
10	10	9.5e-06	0.00057	20.3	2.1	1	23	531	554	531	554	0.96

Sequence Information

Coding Sequence: ATGGAAAGGCCACTAttcaaaaacatcaaaactgAACCATGTAGTCTTCCTTGTGAACAGTTGCTGGTTGCTGACatagaaataaaacaagaatCAGAGATAGAAATAGGCGAAATAGATGAAACAACCTTTTTGCAAGGATACCCAGAATCATCGAAAACGGCCACCAATTCAAATAATCTCAAATCGATCGAAGACGTTACGATTTACGATCAAATCATCAAAGAAGAACCAGTATTCTATGATGAAGTTAATAGTCAAGTGTTGTCATGTCCagaaactgaagaagaaaCATCGAAATCAGCTGAATATTCTGTGCCCACCATAAAATTAGAActcaatgataaaaaaaaacaaatagaagaTAAAATCtttgaatgtttcatttgcaGATGTGAAACAATCAACATTGGCCTATTAAAATGGCATTTACAAGAACGTCATTTGCTGGGACCATTGGTAGGAAACCAGCAATCAGCGCAGAGAAGTTtacaacaatcgaaaaaacaaGAGTTGCCGAGAACGAGTGTTGAGCCAAACAGATTGAAAAATCGGTATTCAAAAGCTTTCCAAGCACAAAAGTCTAACCAACAAAAGGACCTCGATGGACAGCAACACAACGTACAAAATCAAAGTAATAAACGTGGGCTCGAGTGTAGCTATCATTCGACAAAAAGCCAATTGAAACCACCCCAAGTGAAAAAGCTAAATCGAACGAATGTTAAACAGAATGGATCAAAAGAGAAGCATTCGAACAGTTcccaaacaaaaaagtctCATAAACAACATGATTCCGATGCACAGCAAATGAACAGTTTGCAAGGCCAAATTACTGATAGCGTGCTAAAATGTAGCTACTGCCATAGGAAATTTAATACGATCCAACGTGTAAAAAACCATGAGCGAATCCACACAAGCGACCAGCCATATAAATGTTCCAGTTGTTCCAAGGGCTACAACACCAAAGCCCATTTTGACATACACATGCGACGTCATACGGGTGAAAAACCATTCAGCTGTGAAACTTGTGgcataaaatttcattcatcattCCAGCTATATCGACACAAAAAAGCGCATGCCAAAAAAATAGTTCTTGCCGAGCCGCATTCACAGAGAACGAAAATCGTCGAAAATGTTGAACCAAATGATTTTGctaattttcgcattttcgaATGTTACTTATGTCGATTCCGTGGCGGTATAAGTACGCTACAAGTACACATGAGGGAAAATCATACTGGAAAGAAGCTATACCGCTGTAAGATTTGTTCGAAAAAGTTTGCACATAAAGCATCCATTTACAAACACATGAATACGCATTCGAAGAGCAATCAATGCGAGTGtaaagtttgcggaaaaacACTGGCCAGCGAAAATGGCCTAGTGCTGCActtgcaaacacacaaagGCGAATATAAGCATGAGTGTAAATATTGCCACAAGAAATatacaacgaacaaaattttaaGAAGCCACATTCGAACACACATCGGCATTAAACCGTACGAATGCGAATATTGTAAGAGAGGATTTCTTCGGCAGGCGGATATGGTTcgacacacactcatacacaccgGCGAAAGGCCTTACAAATGTGATATATGCGATGTCACTTTTTCGCGCAATCATTTACTTACTGACCACAAAAAGAATGTTCATTCTTTGCggaaatttaaattgaatacgTTTTAA
Protein Sequence: MERPLFKNIKTEPCSLPCEQLLVADIEIKQESEIEIGEIDETTFLQGYPESSKTATNSNNLKSIEDVTIYDQIIKEEPVFYDEVNSQVLSCPETEEETSKSAEYSVPTIKLELNDKKKQIEDKIFECFICRCETINIGLLKWHLQERHLLGPLVGNQQSAQRSLQQSKKQELPRTSVEPNRLKNRYSKAFQAQKSNQQKDLDGQQHNVQNQSNKRGLECSYHSTKSQLKPPQVKKLNRTNVKQNGSKEKHSNSSQTKKSHKQHDSDAQQMNSLQGQITDSVLKCSYCHRKFNTIQRVKNHERIHTSDQPYKCSSCSKGYNTKAHFDIHMRRHTGEKPFSCETCGIKFHSSFQLYRHKKAHAKKIVLAEPHSQRTKIVENVEPNDFANFRIFECYLCRFRGGISTLQVHMRENHTGKKLYRCKICSKKFAHKASIYKHMNTHSKSNQCECKVCGKTLASENGLVLHLQTHKGEYKHECKYCHKKYTTNKILRSHIRTHIGIKPYECEYCKRGFLRQADMVRHTLIHTGERPYKCDICDVTFSRNHLLTDHKKNVHSLRKFKLNTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -