Smos008936.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000001.1:9086928-9089736[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0018 0.11 13.2 0.1 1 23 272 295 272 295 0.94 2 11 0.00038 0.023 15.3 3.9 1 23 322 344 322 344 0.99 3 11 6 3.6e+02 2.1 0.4 2 20 349 366 348 368 0.87 4 11 0.0011 0.065 13.8 0.2 3 23 375 396 374 396 0.98 5 11 0.00027 0.016 15.7 2.1 1 23 432 454 432 454 0.98 6 11 0.0013 0.076 13.6 0.7 3 22 462 481 460 484 0.88 7 11 2e-06 0.00012 22.4 6.8 1 23 490 512 490 512 0.98 8 11 0.072 4.3 8.1 1.0 1 23 517 539 517 539 0.98 9 11 0.0005 0.03 14.9 1.3 1 23 548 570 548 570 0.97 10 11 3.7e-05 0.0022 18.4 2.6 1 23 576 598 576 598 0.98 11 11 1.7 1e+02 3.8 1.3 1 17 604 620 604 625 0.81
Sequence Information
- Coding Sequence
- atgggaaGGAGATATTGTGGTGTACAATCTTGTCAGAATTTTTTTGGGACATCAGATCGAAATGTCGGATTTTTCAGATTGCCAGTTTACGAACCAGAAATTCTGGCTAAATGGAAGCAAGCTGTTAATCGAGAAACCCCAGggaattttttattatgtaGCTTACACTTCAGACAAGAGGATGTTCTATGGAATAAGACGTATGTAAGATTGAGACCAGGCGCCTTTCCAATACCCGTTCCAAAGACTGTCAAGACAGAAATATCAGATGAACTTCCCAAAAATGAGCCTATCACAGATGAAGCTATTACAGAGTACTTTTCGACAGATGAACTTCCAACAGAGGAACCACACACAGAGCATGTGGAAATAATGGATATTGAAGCAAATGAAAGCCGTTTCAGTGCTTCAGATGAGCAAGAATTGTGTCAGTCGTGCATCAACTATGAAGTTCAATTACAAGCGGCTCATACGGAGATAGCGGTATTAAAGgagaaattgaacgaattgacCGTAGAAAATAATATGATGAAGAGTCAAATTCGATCAATATCAACCAAATATTCAACGTGTCACATAATATCTACCATCCAAGAGCCAGAAAGTGTGACTCTTACGATTGAACCTGATCAACCGAtttcaatcgatgaaaaaatattaaacgATTGTTCCGTGTTACCCAATTCTCTATTCAACGATGAGATGGATGGATCGTCCGTGAGTGAACCATCTGAAGAGATTAAACGATATAACAAATCAGTTGAAACAGTAACAGACGTATCTCTCGAACCAAGGCAGCCAACTTTTAAAAtgtttcaaTGCGGAAGATGTGACATCGCATTCGAATTAGCAGCAGAACTGGCTCGTCATATGACGGCATGTCATGATACAAAAACCATAATTGTCCCGCGCTTGCCAAAAGAAAAGACACGTGctgtgagaaagaaaaaagaagggAAGAGCTACCAGTGTCATTTGTGCAGAACGAGTTTCAGTACTTTCAACGGAGTTCGAGTACATATGAAACGCCATGAAAGAGACCAGAAATGCGAGATCTGCAAAATGGAATTAACTGCCAACGAGCTGAGTTCACATTTGTGTGGCGATGTGAAAAGCATTCTTTGTGATTACTGTCCGATCAAATTTACGGTTACATCGGAACTGGTAGAGCATTTGAAAAAGTCACATGAAAAGAGGAAACAATTTTatcgatgtgaaaaatgttcgaGATACCTTCCCATGTTCGTTCTGAAagaatttcatatgaaatcacATGCTAGAGAACTCAAACCATTTGTATGCAAAGTCTGTCACAAGGATTTTGCTTCCAAATTACTTCTTAAGCTCCACGCCAAGAGACACGATGAGACAAAATcTCATCTCTGCGAAGAATGTGGCACAAGTTATGCATCATCACGGAATTTACTGCTTCATAAGAATTCGTATATCCATACGAAAGAGACACCCTTTCATTGTCCTCATTGTCCTAAGAAATTTTCTCAACGTAGCAATTTCAAAAGTCATATGGAAAAACATCAAGAGGATAAATACCCGTGCGAAATCTGCCAAACTGAACTTCTATCAAAGCGATCATTTGACAAGCATATGAAGAGGCACCGACGAACAGAGGCCGACCGAAAGTTTGACTGCAAATTATGTCCTCGGaagtttttttcatcgcaaGCTGTGAGAAAACACCAGCAAGTACACATTGGCGTGAGATCGTTCAGTTGTAAGTTCTGTGATGCAAAATATAAGTATAAAGGGGATTTGAACAAACATCTGAAGACACACATGGGAAACAAAATTCACGAATGTAAAAAGTGCTTCGAGCTATTCGAATATAAAGATCTCCTAAAACACGAAGACGAACAttacaaacaagaaaaagaagcaagcGAAATGAACGAGTGA
- Protein Sequence
- MGRRYCGVQSCQNFFGTSDRNVGFFRLPVYEPEILAKWKQAVNRETPGNFLLCSLHFRQEDVLWNKTYVRLRPGAFPIPVPKTVKTEISDELPKNEPITDEAITEYFSTDELPTEEPHTEHVEIMDIEANESRFSASDEQELCQSCINYEVQLQAAHTEIAVLKEKLNELTVENNMMKSQIRSISTKYSTCHIISTIQEPESVTLTIEPDQPISIDEKILNDCSVLPNSLFNDEMDGSSVSEPSEEIKRYNKSVETVTDVSLEPRQPTFKMFQCGRCDIAFELAAELARHMTACHDTKTIIVPRLPKEKTRAVRKKKEGKSYQCHLCRTSFSTFNGVRVHMKRHERDQKCEICKMELTANELSSHLCGDVKSILCDYCPIKFTVTSELVEHLKKSHEKRKQFYRCEKCSRYLPMFVLKEFHMKSHARELKPFVCKVCHKDFASKLLLKLHAKRHDETKSHLCEECGTSYASSRNLLLHKNSYIHTKETPFHCPHCPKKFSQRSNFKSHMEKHQEDKYPCEICQTELLSKRSFDKHMKRHRRTEADRKFDCKLCPRKFFSSQAVRKHQQVHIGVRSFSCKFCDAKYKYKGDLNKHLKTHMGNKIHECKKCFELFEYKDLLKHEDEHYKQEKEASEMNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -