Smos017619.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- ZFY
- Assembly
- GCA_009176505.1
- Location
- VUAH01000074.1:146015-149242[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.017 1 10.0 4.6 1 23 101 123 101 123 0.98 2 13 0.3 18 6.2 0.7 5 23 151 169 145 169 0.86 3 13 0.00065 0.039 14.5 0.3 2 23 175 196 174 196 0.91 4 13 0.13 7.5 7.3 4.7 1 21 202 222 202 223 0.90 5 13 0.00033 0.02 15.5 0.3 1 23 246 268 246 268 0.99 6 13 5.6e-05 0.0034 17.9 2.4 1 22 274 295 274 295 0.96 7 13 0.0093 0.55 10.9 0.8 2 23 368 389 367 389 0.97 8 13 0.36 21 5.9 5.2 1 21 395 415 395 416 0.95 9 13 0.1 6 7.6 0.4 1 23 618 640 618 640 0.98 10 13 0.0098 0.58 10.8 1.5 1 21 646 666 646 667 0.95 11 13 0.0025 0.15 12.7 1.2 1 23 863 886 863 886 0.97 12 13 0.00012 0.0071 16.9 1.2 1 23 892 914 892 914 0.94 13 13 0.002 0.12 13.0 1.7 1 22 920 941 920 941 0.96
Sequence Information
- Coding Sequence
- ATGGAACTATCGAGTCCGGGTGAAGAAAATTACGATTGCAGCAAAGCCATGGAGTCTGTAGCAAGTAATCAGGCGGATCAACAAAGTATTCCAATTGTATTCGTCGATAGCTCAAATCTCAACACCAAAAATCACGAAGAACGGTTCAGTGTAGTGAatttcaacaatgaaataaatccaCTGGAATTGAAGGCTGTAGACACTATAAAAACCGAGAATGTTATCAAAGAAGAGCCTTTGCAAGATTTCGCATCGCTAAAATCTGTTGAGATTTACGAAACAGCCACCGTCCAATTAAGATATCAATGTgacatttgtttgaaaatttgttcgaaTCGCAAGGCGTTGCATgagcacaaatacacacacaacaatgtGAATCGGGGGAATATTACACAACAATGTGAATACGAGGGTGATTCATCCGAGAAGGAGTGTTTTCAGTATGATGTGTGCTCAAACGagtattcaatttattcgaaaCTACAAAGACACAAACGAACGCACGACGAAAAACTATTAGTGTGCCAATATTGCCCGAAGAAATTCAATGATCCGAATCTGTTGAAATATCATGAGGGAAATCACACGGGCGATAAACCGTATATGTGTGTTTACTGCTCTAAAAGCTTCGCGAATCCAAGCGCATTTTGTtgtcacagaaaaaaatgcaaattgaagCATGAAAGTGTTGACAGTACCGAACCCAGAACGACCCATGTGAATTACTCTGTTTATAAATGCCGGTTTTGTTCCAAAGAATATCCCGATAAGGTATCACTAGTTATTCACGTACGAGTTCACACAGGCGAAAGACCATACGAATGTCCGTCATGCTCAAAAACATTCGCAAATCCAAGCTCATTTTGTAGACACAAAAGAAGATGTCAATCAAATGGTGGGAGTGTTGATGATACCGCACCGAGAAATATTCATGTCGATGACGCGACTGAGGCAACTCAAATTCATGAAGTTACCCAATTCACTGAGAATGGAGGAAAATTGCTAGAAAAGAACGGCCAGCCACTTCGAATTAGCTCTAAAGAAGATTCGAATGAAATCTTGCCAAAAGAGCCCAGTACTATCCATGGTTTGGCGAATAAATGTCGATTCTGTccaaaaacatttattttgaagcAGTTTCTAGTAGTTCATGAACGGATACACACTGGGGAAAAACCATACCAATGCCCATTATGTTCAGCAAAATTCTCATGTCCAAGCTCGTTTTGTAGGCATAAGAAGAGATGTCGGTTTAATCATTCGAGGGCTCAACGTACCATCACAAGGAAGATACGTGTTGACGAAGTTGAACGAATCCCTGCAGCTGCTCGAAGCGCTAAGAGTGAAGATGCATTACCAGAAAAGAACGATCGTCCGCTTGATGtatacattgaagaaaattcgaaAGACATTCCGTTGCCACCTATCGAAATGGTTGTGTATAATGTGTACAAACACAAAAAGAGGTGTAAATTATTGACACAGATTGTCGATCAAATGTTCCCACCTGATTCGATGTCATCGAATGGTGATTGTGGATCCGAAGACAGACCCTTGTTCAATTCTGGCGAGAATAATTCTAAGAATAAGCACAATCATTCCATCGAAGCAATTAAGACAGAGAACTCACAATTAGATGAAATCAACTCAACTGAAGCTGACTTTGAATCACAGCTACAGCCGTTTGAATTGAAAGACGAACCGATCAATATATGTGACGAGGATGCaacaatgaatgaatcattggagattgaaaatgaacaagacATACCGACTCATATTGAATGTGAAGCTTCTTTGGAAAATGTTCCAAACTCACGCATTTTGCAACAACCCGACTCTAAGTTATTCCCCTGCCAATACTGTTCTAATGTTCTCAAACGAAAGGGAATTTTGGAAACCCATGAACGAAGCCATACCGGCGAGCGACCGTTCAAGTGTTTGTTGTGTTCAGAAACATTCGGCAATTCCGGTTCATTTTTTAGACACAAAAAGAGGTGTCAATTATTGACACGAATTTTGGACCAAACGTGTCCATCTGGCGCGAAGTCGTCAAATGCTGAAAGTGATCGTGGGTTAGAAGACACCGGGCTTTTGTTCTATTCCGGCGAGTGTAGTTCTAAGAATAAGAATAGTCATTCCGTCGAAGCAAACAAGACGGAGAATTCGCAACTAGATAAAATCCATTCAACTGAAGGCAACTTTGAATCCGAACTACAACTGAATGTTGTCAAGATTGAACCGATCGAAATATATGCCAAGGAAACATCAATGAATGTTGGTGAATCAATGGAGAAACCGAGTCTTCCTTTCAAAAGTATTCCGGGAGATTCTTCTGGAAAAAATGACATAGTGACGAATGACATCAGAGAAGTCAACCAAGGCACATCTAATTCGATACATGACGATGAATACGATTTTGAAACATTCTTGGAgaatttttgctgttttgatgatgacaacgatTTTCATCAAGTGAATGGTCATCCGTTAATTGTGCCAAATGGTACAAACGGAAATATTGAAGCCCATATCGTTGGTGTGAAATGCCGTGCAATTGAAGTAAAAGATCCAAATAAGATgttcaaatgcgatttttgcCATGCAGAATTTGCAGAAAAACCAAAGCTGAATAGACATGTGCAGAGTGACCACCCCTATTCAAAGCCATTCTTGTGCAAATTCTGTCCAAAAACTTATAAAACTcgacaaaatttgaaaatacacGAGATAATACATACGGGCGAAAGAACCTTTGAATGTTGTATTTGTCGCGATACATTCAGCCAGAATAGTGCACTGTGGCGACATCGAAAGACGTGTCAGCGAAGGAGACAGAGGCACATCTGA
- Protein Sequence
- MELSSPGEENYDCSKAMESVASNQADQQSIPIVFVDSSNLNTKNHEERFSVVNFNNEINPLELKAVDTIKTENVIKEEPLQDFASLKSVEIYETATVQLRYQCDICLKICSNRKALHEHKYTHNNVNRGNITQQCEYEGDSSEKECFQYDVCSNEYSIYSKLQRHKRTHDEKLLVCQYCPKKFNDPNLLKYHEGNHTGDKPYMCVYCSKSFANPSAFCCHRKKCKLKHESVDSTEPRTTHVNYSVYKCRFCSKEYPDKVSLVIHVRVHTGERPYECPSCSKTFANPSSFCRHKRRCQSNGGSVDDTAPRNIHVDDATEATQIHEVTQFTENGGKLLEKNGQPLRISSKEDSNEILPKEPSTIHGLANKCRFCPKTFILKQFLVVHERIHTGEKPYQCPLCSAKFSCPSSFCRHKKRCRFNHSRAQRTITRKIRVDEVERIPAAARSAKSEDALPEKNDRPLDVYIEENSKDIPLPPIEMVVYNVYKHKKRCKLLTQIVDQMFPPDSMSSNGDCGSEDRPLFNSGENNSKNKHNHSIEAIKTENSQLDEINSTEADFESQLQPFELKDEPINICDEDATMNESLEIENEQDIPTHIECEASLENVPNSRILQQPDSKLFPCQYCSNVLKRKGILETHERSHTGERPFKCLLCSETFGNSGSFFRHKKRCQLLTRILDQTCPSGAKSSNAESDRGLEDTGLLFYSGECSSKNKNSHSVEANKTENSQLDKIHSTEGNFESELQLNVVKIEPIEIYAKETSMNVGESMEKPSLPFKSIPGDSSGKNDIVTNDIREVNQGTSNSIHDDEYDFETFLENFCCFDDDNDFHQVNGHPLIVPNGTNGNIEAHIVGVKCRAIEVKDPNKMFKCDFCHAEFAEKPKLNRHVQSDHPYSKPFLCKFCPKTYKTRQNLKIHEIIHTGERTFECCICRDTFSQNSALWRHRKTCQRRRQRHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -