Smos000297.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01006190.1:5843277-5846969[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0017 0.1 13.2 4.7 1 23 241 264 241 264 0.96 2 13 0.0027 0.16 12.6 0.1 1 23 266 288 266 288 0.98 3 13 0.59 35 5.2 0.1 2 23 326 348 325 348 0.83 4 13 0.0013 0.079 13.6 0.9 1 23 381 403 381 403 0.98 5 13 1e-05 0.00061 20.2 0.6 1 23 413 436 413 436 0.92 6 13 0.016 0.97 10.1 0.4 2 23 442 464 441 464 0.96 7 13 0.23 14 6.5 0.8 2 23 482 504 481 504 0.95 8 13 7.7e-05 0.0046 17.4 2.7 2 23 538 559 537 559 0.97 9 13 1.5e-05 0.00089 19.7 1.5 1 23 563 586 563 586 0.95 10 13 8.6e-05 0.0051 17.3 1.3 2 23 626 647 625 648 0.94 11 13 0.15 8.7 7.1 0.1 2 23 692 714 692 714 0.95 12 13 0.00089 0.053 14.1 1.4 1 23 720 742 720 742 0.97 13 13 0.03 1.8 9.3 0.2 1 23 748 771 748 771 0.97
Sequence Information
- Coding Sequence
- ATGTGTACAAAACAAGGTGATAAATGTCGTTTGTGTTTCACACACGGCTTCTTCCATATAAACTTATTTGCAACGCCACAGAGGGCTGTTGAGGTGATTCGAGAGATATTCCATTGCGAGGTAGCTGAATACGATGGGCTTCCGAATCATATTTGTGTTGATTGCTGGATGACAATAAAAACTTTCTAcgaattttatcaaaatgtaATTGCTGCTCAAAAACAGTTCCTATTAGATGGAAGTATACCCATTAAGATCGAGGCGCCGCATGAAGAAACGGTCGTCAGTTATATCGACGATTTGAACTTTGGATTACAAagcgaaaatgaattgaagcTAGATGACATTGAACAAACCAGTGAAGATGTTGTGTTTCATGAAGAATTGAAGTCAAAGGTATATGCCAGCGATAATCAAACATCACACTTTGATGATGGCCCTGATGGTGATacttttgatgatgatgaaagtGATCCGGATTTTCAAGGAGACGAAGACAAATCTGAGAGCgATGAATCGTTTAGAGAAGAAATCGAAGATGGTGACGATATTGACGATGACTATGGTGATGACTATACACCAGCAAAGGCGTATAAAAGAAAAGACTCGAAAACGTCGCAGCCGAAGCGGAAAAGAGGTCGACCAAGAAAATATCTAACAAAAGAGGAAGCTGATCGCATGAAAAAGaccaaacacaaaaactgGAGAGATGGCAAAATTTTCAAGTGTCCACATTGTGTGAAAACATTCACGCGTCGTCACCGGGTATCGGTACATATTCAGCTTCGTCATGGCTTTGAATGTGGCATCTGTAATCTTAGGCTGCCATCGgagcaaaaattgaaacagcACATCAACATTCATGAAGAAGGTTTCGATATAAAACTTCGTCAAAAGCTCGATGAAATCGTATCGATTGACACAAACGATGTAACTCCGGAGGAAAGAGATGACATTTGGGGACGGTTCAATTTGAAGTGTGACGAGTGTCCGACAGTATTTCAGGCGCTCAACGAAGCCCAAGTGCATTATTTAAACGAACACAATAACAGCCGCGGATATATACAATGttgcgaaatgaaatttcgcgAAGACCACATGATCAAAGAACACATTGCCTATCATAAAAATCCAGACATTTACTCCTGTTTCATTTGTGATGCAACAATCAAAGTTAAATCCTACCTAAGAAGCCATCTAAAGAATCATATCGTTGACCTTTTGGAAAATCCACAATACGTGTGCGATGTGTGCAATAAACATTTCGtaaccaaatcaaatttacTGATCCATAAGGCTGAAGCGCATGTCaaagagaaaatcaaatgtgaaatttgctcAAAAACGCTATTTAGCGTAGCacaaaaggaaaaacacaTGCGAAATGCACATGAAACGATGTCCCAACAGCAACTGGATTATGTGGTTGCTCATTTTGATATGTCTTGTGATCAATGTGAGGTAATGTTCGACTCGTTTCCACATGCAAAGCGTCATTATTTAAGCGAACACAGCGAACCAAAGGGCTATATCAAATGCtgttcaaagaaaatgaaatcgctGGCCGCTATTGACGACCACATTCAATGGCACAGAAATCCAGAGAGTTTGAGATGTCCAATTTGTGACAAATTATTCAACCTCAAGGATCACTTCAAGACACATGTTCGACGTCACGGTAAAACATTCACGTGTGAAATATGTGGAAAGTCATTCAAACGGCACACAACACTGGTTGGCCACCGAAAAGCCGTGCACGAGAGTGGCCCACGAGATTTCCAATGTCGATTCTGTAGTTTGCGATTTTTATCGGCTGAAAAGCGTGATGGTCATGAGCAATTGATTCACTATGGAAATACTACCGGTGCCCGTATCGTGTGTGACATTTGCGGAAAGGGATTCCTGCAGACGAGCCACttacaaaaacacattcagGCCCATCATTCGGATGATCCACAGAAGCGggcgaaaaaagaagagaacaaAAGTGAAATGTGTACAATTTGCGGGCTATGGCTGAGCAGTCGTTATCGCCTGAAATTGCATCGCAAATGTCACTCAATGGAACCGAACCGATGTCAGGAATGTGGCCTAGAGGCGCCAAATCATGATGCTTTACTTGGTCATATTCGGGCATTTCATGAAATTCGCCGAAAACACAAATGCCGACTGTGTGATCTATCGTTCAACAATACCGAGGAGTTGCAGGAACATGGAAACTCACATTCCACCGAAAAGCTTTACCAATGCGTCTATTGCTTTGAGTCATTCGTTTGGAGAGCCAGTATGGATGCTCATATGAAAAAAGCGCATCCACATGAATGTGACGGCGAAAGAGCCACCGAACCAAATAGTATCGTACAAAAATGCACCGTTCCACACGAtgccattgaaaataaaagtgtgGACTCACATATTGACTGTAGCTCAAATTGA
- Protein Sequence
- MCTKQGDKCRLCFTHGFFHINLFATPQRAVEVIREIFHCEVAEYDGLPNHICVDCWMTIKTFYEFYQNVIAAQKQFLLDGSIPIKIEAPHEETVVSYIDDLNFGLQSENELKLDDIEQTSEDVVFHEELKSKVYASDNQTSHFDDGPDGDTFDDDESDPDFQGDEDKSESDESFREEIEDGDDIDDDYGDDYTPAKAYKRKDSKTSQPKRKRGRPRKYLTKEEADRMKKTKHKNWRDGKIFKCPHCVKTFTRRHRVSVHIQLRHGFECGICNLRLPSEQKLKQHINIHEEGFDIKLRQKLDEIVSIDTNDVTPEERDDIWGRFNLKCDECPTVFQALNEAQVHYLNEHNNSRGYIQCCEMKFREDHMIKEHIAYHKNPDIYSCFICDATIKVKSYLRSHLKNHIVDLLENPQYVCDVCNKHFVTKSNLLIHKAEAHVKEKIKCEICSKTLFSVAQKEKHMRNAHETMSQQQLDYVVAHFDMSCDQCEVMFDSFPHAKRHYLSEHSEPKGYIKCCSKKMKSLAAIDDHIQWHRNPESLRCPICDKLFNLKDHFKTHVRRHGKTFTCEICGKSFKRHTTLVGHRKAVHESGPRDFQCRFCSLRFLSAEKRDGHEQLIHYGNTTGARIVCDICGKGFLQTSHLQKHIQAHHSDDPQKRAKKEENKSEMCTICGLWLSSRYRLKLHRKCHSMEPNRCQECGLEAPNHDALLGHIRAFHEIRRKHKCRLCDLSFNNTEELQEHGNSHSTEKLYQCVYCFESFVWRASMDAHMKKAHPHECDGERATEPNSIVQKCTVPHDAIENKSVDSHIDCSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -