Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01006225.1:3346334-3349425[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.17 10 6.9 0.5 2 23 344 368 343 368 0.90

2 10 1.8 1.1e+02 3.7 0.1 6 23 377 394 377 394 0.97

3 10 2.9e-05 0.0017 18.8 0.8 1 23 400 422 400 422 0.99

4 10 0.0015 0.092 13.4 1.4 1 23 430 452 430 452 0.97

5 10 9.2e-05 0.0055 17.2 0.4 1 23 461 484 461 484 0.95

6 10 0.00014 0.0081 16.7 2.5 2 23 494 516 494 516 0.97

7 10 0.28 17 6.2 1.4 2 23 525 546 524 546 0.94

8 10 0.00016 0.0094 16.5 1.3 1 23 551 574 551 574 0.97

9 10 6e-05 0.0036 17.8 0.7 1 23 580 602 580 602 0.96

10 10 6.3e-05 0.0038 17.7 3.1 1 23 608 631 608 631 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.17	10	6.9	0.5	2	23	344	368	343	368	0.90
2	10	1.8	1.1e+02	3.7	0.1	6	23	377	394	377	394	0.97
3	10	2.9e-05	0.0017	18.8	0.8	1	23	400	422	400	422	0.99
4	10	0.0015	0.092	13.4	1.4	1	23	430	452	430	452	0.97
5	10	9.2e-05	0.0055	17.2	0.4	1	23	461	484	461	484	0.95
6	10	0.00014	0.0081	16.7	2.5	2	23	494	516	494	516	0.97
7	10	0.28	17	6.2	1.4	2	23	525	546	524	546	0.94
8	10	0.00016	0.0094	16.5	1.3	1	23	551	574	551	574	0.97
9	10	6e-05	0.0036	17.8	0.7	1	23	580	602	580	602	0.96
10	10	6.3e-05	0.0038	17.7	3.1	1	23	608	631	608	631	0.97

Sequence Information

Coding Sequence: ATGATGAATTCCAGTCAAAAGGAAATTTGCCGTTTGTGCTATTATGAAACAGTCGACACCACCGATATATTTAGTGAAAAAGGCCACGCTTTCGATTATATCggcaaaatcaacaaatatttatacttTTCGGTATCAGATAATGATGCATTGCCTAAAACTGTATGCTGGATGTGTACACAACACCTGGAAACTTTTCATCGTTTCTACGAAAAGaTAAATGACATCCAAAAGTTGCATTTGAGTAAAGAAGAGTACGAGGCGGTTGTGCTGCGACCAAAATACATAGATAGAGAACAGATCAATAGTGGGCccgagaagaaaaacgataCAATTGTTGACGATGATGGCAACATGTATGAGGTGTTTGTGATCTCTGAAGATCCGGAGAATAAACCAACAATAGAACCGGAATTCGAAGAGTTTGAATTGCTCGAGGTTGATAATGGTGATGCAAACAATCAAACCACTGAAATTGCCAACGTCGAACcgcttcaaaatgaaacatctCCAGTGATACGGAGTAAAAAagcgaatgaagaaaaacaaaccgaaatcgAATTGATGGAAACTGGTGAgcttgaaaatgttgaagacAAAGCAGTTATATCAACGAGGACACGATCGAGACGGAAATCAAGAATCACCACAAAAAAGGATTCGGAATGTGAACTACAAAGTTTTGGCAGAACTACGCGACAAACTACCAAAATGAAGAATGATATGAAAAAACTCGTTCAAAATCTCAAACAGATCAAAAAAGCACCAGACCCCGTAGTGAAGAGTGAAAATCGTGAGCAATCGATATCAAAATATTCTACAGAAAATTGTGTAGATGAGAATATGCAGCTAGATTACGATGGAACTGAGGGAGAAAGTGATAATGAATTCCCAGCTAGAGATTCGGACAATGAAGATTGGCCTTCGCAAGAAACTCTCAACGAATTCCCAAAACAAATCATCAAAGACGGTCTGTTGCAAGTTAAAGGTAAAGAGCTGATGTCGTTGATTTGCAGGTTTTACAACTTGGAGTGCAAGCTATGCGAGGAAAAACGAAGATTCAAGCAACTAAGTGACTTACTGGACCACTATACAAATGGCCACAAAGAGGAAGGCTATGTGGAATGCTGTCAAACTAAATTCACTCGATACCCCGCCATCATCATGCATATGGCACGACATTTGCAACCAGATGCATTCAAATGTGACGAATGTGGTTACGTAGTGACACGGCCCCGATTCCTTCAGAGTCATAAGCAAACTCATTTACCTGATGACCAAAAGCCATATGCGTGCACTGAGTGTTCACGACGATTTTGCTGGAAAAGTGCGCTTCGTATTCATTTGATTAGTCATAAGCCAGCCAGTGAACGGCGTCAGTACATTTGCCATGTTTGTGGTCGAACATACGATACTCCGGGTGGTCTGTCAACGCATAAGAAATTAGCCCACAGTGAAGCAAAACCGCTCCAATCGAATGTGTGCCATATTTGCGCGAAGAACTTCTCAACACGTACCGGTCTCCATGAGCATATGATGACAATCCATCAGCCGCGTGAAAAGGGCCAGATGCAATGCACCGAATGTGGCAAATGGTTGATGAATTTGCGATGCCTTAAAACGCACATGGTCCTCCACAGTGATGTCGAATTTCGTTGCGACAAATGTGACTAtgtgacaaagaaaaaagtactTTTGAATCGTCATTTGGTGACACAACATTCCAATGTCCGGCCATATGTGTGCGATCATTGCGGTCGagattttaaaatgaaacgtGCATTAACCGTTCACGTAGCTCAACATGGTTCGACAACGAAGTACCAATGCCCATTCTGTCAGAGATCATTCAATAGCTCAACCAATTTTTACACTCATCGAAAGAATGCACATCCCAAAGAATTGGCCGAGATGAAACGTCAAGAGGAGGCagagcgaagaagaaaacgaatcGAGGCTGGTGTCGAAGAGGGAGAAGTAGATGAATCAGATGCGGACAAAGAGCAAGACATAGTACAACCGATTGAAATTCAAGAGGAAGATGAAGATGAGGAAtcaacaacatttcatgtgACCGAGCTTCGTAATACTCATCTAATACTAACAACTGATACAGGGGAAGAATACACGGTTTTAGAAGTAAAATCACATGAAAACAACGATGCATCGTGA
Protein Sequence: MMNSSQKEICRLCYYETVDTTDIFSEKGHAFDYIGKINKYLYFSVSDNDALPKTVCWMCTQHLETFHRFYEKINDIQKLHLSKEEYEAVVLRPKYIDREQINSGPEKKNDTIVDDDGNMYEVFVISEDPENKPTIEPEFEEFELLEVDNGDANNQTTEIANVEPLQNETSPVIRSKKANEEKQTEIELMETGELENVEDKAVISTRTRSRRKSRITTKKDSECELQSFGRTTRQTTKMKNDMKKLVQNLKQIKKAPDPVVKSENREQSISKYSTENCVDENMQLDYDGTEGESDNEFPARDSDNEDWPSQETLNEFPKQIIKDGLLQVKGKELMSLICRFYNLECKLCEEKRRFKQLSDLLDHYTNGHKEEGYVECCQTKFTRYPAIIMHMARHLQPDAFKCDECGYVVTRPRFLQSHKQTHLPDDQKPYACTECSRRFCWKSALRIHLISHKPASERRQYICHVCGRTYDTPGGLSTHKKLAHSEAKPLQSNVCHICAKNFSTRTGLHEHMMTIHQPREKGQMQCTECGKWLMNLRCLKTHMVLHSDVEFRCDKCDYVTKKKVLLNRHLVTQHSNVRPYVCDHCGRDFKMKRALTVHVAQHGSTTKYQCPFCQRSFNSSTNFYTHRKNAHPKELAEMKRQEEAERRRKRIEAGVEEGEVDESDADKEQDIVQPIEIQEEDEDEESTTFHVTELRNTHLILTTDTGEEYTVLEVKSHENNDAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -