Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01000002.1:7015539-7017572[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.036 2.2 9.0 2.6 1 23 317 340 317 340 0.97

2 8 0.00098 0.058 14.0 4.2 2 23 349 370 348 371 0.94

3 8 0.00074 0.044 14.4 1.5 1 23 377 399 377 399 0.97

4 8 7.5e-05 0.0045 17.5 1.2 1 23 405 427 405 427 0.98

5 8 0.00029 0.017 15.7 0.5 1 23 433 455 433 455 0.98

6 8 2.1e-07 1.2e-05 25.6 0.7 1 23 461 484 461 484 0.96

7 8 0.00024 0.014 15.9 3.1 1 23 491 513 491 513 0.95

8 8 1.8e-05 0.0011 19.4 0.3 1 23 519 542 519 542 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.036	2.2	9.0	2.6	1	23	317	340	317	340	0.97
2	8	0.00098	0.058	14.0	4.2	2	23	349	370	348	371	0.94
3	8	0.00074	0.044	14.4	1.5	1	23	377	399	377	399	0.97
4	8	7.5e-05	0.0045	17.5	1.2	1	23	405	427	405	427	0.98
5	8	0.00029	0.017	15.7	0.5	1	23	433	455	433	455	0.98
6	8	2.1e-07	1.2e-05	25.6	0.7	1	23	461	484	461	484	0.96
7	8	0.00024	0.014	15.9	3.1	1	23	491	513	491	513	0.95
8	8	1.8e-05	0.0011	19.4	0.3	1	23	519	542	519	542	0.94

Sequence Information

Coding Sequence: ATGATTGTGTACAAAACACCGACTGTCGCTGCTTTTCATCATCGGCAGCAGTTCCACGCTACACAAAAAACGCAAGGTGAAAGTATTTCCGATTGGTTCAAGCGGCTTCAGAATTTTATTGCGAAATGTGAGTTTTTGGACACATCGGATTACATGCTCATCGATAAATTTGTTAGCGGTCTCAATGAAACGGATTTCGAGAAACTATCACAAGTTGCCACTTGGACTGCCGAAgaattggttttggttgtAATCGGtaatgcacacattttcaaaaatctgCCCATCAAAGACGAACAACAAGCTAATGACAGCCACGATATACCGCCTGTTGAAGTGAAAGAGGAATGTTACATGGATATAAATATCGCCGCGAATGATGAAGCAGATTGTGATTTTGACCATGGCGATTCAAACGACATGGAATCATTGGAATTTATGAAAACTGGTGATGAAACGCCAATTGCAAATAATGACAAGTCCAAATTTAAGAAAAGGACACATCGGGAGAACAGTGTACGAGCTAAGAAGCACGTGGAAATGTTGAAACGAACTGGCCGATATGAAGAgtacaaacgaaagaaagcgGTTAGTGCCAAAAATCGAAGAATGAAAGCCAAAGAAAACGAACAGTATTTACCGCCGGAGCTACAGTTGCATCTAATAAATGAGCGTCGACGTGCGACACGTGAAAGAGTGAAACGGTGGCGTGAACGTAAAACACAAAAACCCGAAGATCTGAATGAATCAATTCCAGCAGAAGTAGCCACTGTCATTGTCAATGAATGTTTGGAAGCAGAAGTACCTGATGTGGTCATCGATAAACCGATTGAAGAGGACAACCTACTGTTACAGCCATTGGAACGAAGACGCagtggaagaaaaacacaatacAAGAAGCCGAAAACggtcaaaagaaaatcaaaatacataAAGAAGCATCGAGAGTTTGAATGTTACTTGTGTTTGTTGAAATGTAAGAGGATGTATGAATTGAAAGCTCACTTGAACGTGTTTCATCCGGTGGAAAAGCGGGAAGTACTCAACTGTCCTCACTGTACTAAAACGACGGTTAGTCGAGAGGTACTTAGTCGGCATTTGAGAAAGCATCATGGTACAATTGAAATGCACAAGTGTCCCTGTTGCGACGAGGATTTCACAAGACGAGGTCAGCTAAGCGCACATTTAGCCATTCACCCAAATTACCGGCCATTCATATGCGAGACGTGCGGCAATGGATTTAAAACCAACAACGAACTTACTTCGCATTTCCGAAAGCACACCGGCGAGAAGCCATTCAAGTGTGGCGTGTGTGATATGTTCTTGGTATCAAGATCATCGTATCGTAGCCATATGTTGGTTCACACCGGTGAACGGCCATATCCGTGTAAGCTGTGCGACAAAGAATTCCGGCAACAATCAAGTTTGCGCAAGCATTTGATCTCGATCCACAATCAAGGTGAAAAACCTTACCTATGCACCACATGCAATAAACGATTTTCATCGATCTACCACTTGAGAATTCATTCAAACGTTCACACAGGTGATCGTCCGTATCTATGCAAATACTGTAATAGCACCTTTAGCCAACCATCAGCACTCAAGGCGCATGTTGAACGAATTCACGAGAATAAACGGCGCAATCGAAAAATGGACGAGAAAATCATggataaaaatttaattttatcgttgccaaaataa
Protein Sequence: MIVYKTPTVAAFHHRQQFHATQKTQGESISDWFKRLQNFIAKCEFLDTSDYMLIDKFVSGLNETDFEKLSQVATWTAEELVLVVIGNAHIFKNLPIKDEQQANDSHDIPPVEVKEECYMDINIAANDEADCDFDHGDSNDMESLEFMKTGDETPIANNDKSKFKKRTHRENSVRAKKHVEMLKRTGRYEEYKRKKAVSAKNRRMKAKENEQYLPPELQLHLINERRRATRERVKRWRERKTQKPEDLNESIPAEVATVIVNECLEAEVPDVVIDKPIEEDNLLLQPLERRRSGRKTQYKKPKTVKRKSKYIKKHREFECYLCLLKCKRMYELKAHLNVFHPVEKREVLNCPHCTKTTVSREVLSRHLRKHHGTIEMHKCPCCDEDFTRRGQLSAHLAIHPNYRPFICETCGNGFKTNNELTSHFRKHTGEKPFKCGVCDMFLVSRSSYRSHMLVHTGERPYPCKLCDKEFRQQSSLRKHLISIHNQGEKPYLCTTCNKRFSSIYHLRIHSNVHTGDRPYLCKYCNSTFSQPSALKAHVERIHENKRRNRKMDEKIMDKNLILSLPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -